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ProteomicsBacteroides thetaiotaomicron grown on different sources of dietary protein and glucose
We previously observed in mice that Bacteroides thetaiotaomicron (B. theta) significantly increased in abundance in the gut microbiome of mice when mice were fed egg and yeast dietary protein sources. We also observed that B. theta was expressing proteins previously connected to growth on mucin glyc...
ORGANISM(S): Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) 
2024-12-18 | PXD050296 | Pride
Protein media Bacteroides thetaiotaomicron Gut bacteria 
ProteomicsDifferential proteomics of bacteria grown in vitro and in planta reveals genes used during growth on maize roots
Plant-associated microbial communities play a crucial role in plant health, yet the metabolism and physiology of bacteria in the rhizosphere remain poorly understood. In this study, we used seven bacterial species (Brucella pituitosa AA2, Chryseobacterium indologenes AA5, Curtobacterium pusillum AA3...
ORGANISM(S): Stenotrophomonas maltophilia Herbaspirillum robiniae Ochrobactrum pituitosum Enterobacter ludwigii Zea mays (Maize) Curtobacterium pusillum Pseudomonas putida Chryseobacterium indologenes 
2026-07-28 | PXD064252 | Pride
1d-lc Metaproteome Microbial physiology Maize Differential metaproteomics Plant-microbe interactions Metaproteomics 
UnknownCoordinated modulation of multiple processes through phase variation of a c-di-GMP phosphodiesterase in Clostridioides difficile.
Not available
S-EPMC9286219 | biostudies-literature
UnknownCompensation for wind drift prevails for a shorebird on a long-distance, transoceanic flight.
Not available
S-EPMC8900403 | biostudies-literature
ProteomicsMetaproteomes of intestinal microbiomes from mice fed different sources of dietary protein
Diet plays a major role in altering the composition and function of the gut microbiota. Previously most studies have focused on the effects of fiber, fat, and different amounts of protein on the gut microbiota. In this study we investigated how different sources of protein affect the gut microbiota ...
ORGANISM(S): Bos taurus (Bovine) Danio rerio (Zebrafish) (Brachydanio rerio) Gallus gallus gallus Lathyrus aphaca Oryza sativa subsp. japonica (Rice) Glycine max mouse gut metagenome Zea mays (Maize) Mus musculus (Mouse) Triticum aestivum (Wheat) Cyberlindnera jadinii 
2024-12-18 | PXD041586 | Pride
Microbiome Mouse diets Metagenomics Gut Microbiota Metaproteomics Dietary protein 
UnknownGenetic associations in the vitamin D receptor and colorectal cancer in African Americans and Caucasians.
Not available
S-EPMC3203108 | biostudies-literature
Unknown⁠Reversible C─H Insertion in Bulky Unsaturated NHCs: A Carbon-Based Analogue of Oxidative Addition/Reductive Elimination.
Not available
S-EPMC12731540 | biostudies-literature
ProteomicsLinking Intestinal Microorganisms to their Diet-derived Growth Substrates Using Protein Stable Isotope Fingerprinting (Protein-SIF)
The aim of this study was to directly link intestinal microorganisms to their diet-derived in vivo growth substrates using protein stable isotope fingerprinting (“Protein-SIF”)(Kleiner et al. 2018, PNAS 115(24)). We conducted studies in gnotobiotic mice (C57BL/6J) colonized with a community of 13 hu...
ORGANISM(S): Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) Glycine max Faecalibacterium prausnitzii M21/2 Mus musculus (Mouse) Helianthus annuus (Common sunflower) Marvinbryantia formatexigens DSM 14469 Roseburia intestinalis L1-82 Gallus gallus (Chicken) [Clostridium] symbiosum WAL-14163 Bacteroides ovatus ATCC 8483 Escherichia coli HS Bos taurus (Bovine) Agathobacter rectalis DSM 17629 Beta vulgaris (Sugar beet) Akkermansia muciniphila ATCC BAA-835 Bacteroides caccae ATCC 43185 Barnesiella intestinihominis YIT 11860 Zea mays subsp. mays (maize) Bacteroides uniformis ATCC 8492 Collinsella aerofaciens ATCC 25986 
2024-12-16 | PXD046928 | Pride
1d-lc  mass spectrometry  ms/ms  metaproteomics  metaproteome  microbiota  microbiome  gut  intestinal  fecal  mouse  diet  protein-sif. 
TranscriptomicsDifferentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica
Root-knot nematodes (RKNs) induce inside the vascular cylinder the giant cells (GCs) imbibed into a gall. Gene-repression in early developing GCs could be facilitated by small RNAs (sRNA) as miRNAs. 24nt-sRNAs, rasiRNAs and 21-22nt-sRNAs can also mediate epigenetic mechanisms. Three sRNA libraries f...
ORGANISM(S): Arabidopsis thaliana 
2015-11-19 | E-GEOD-71563 | biostudies-arrayexpress
ProteomicsDetection of Lactococcus lactis contamination in standard and ethanol-washed casein used in mouse diets for microbiome studies
Casein is a common source of dietary protein in defined diets used to investigate the effect of diet on the gut microbiota. Previously it has been shown that the metagenomes of mice fed with a diet containing casein were contaminated with DNA from the bacterium Lactococcus lactis and that washing th...
ORGANISM(S): Bos taurus (Bovine) Lactococcus lactis 
2024-12-18 | PXD040649 | Pride
Microbiome Mouse diets Casein Microbiota Ethanol wash Metaproteomics Dietary protein 
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