Ruiz E E - OmicsDI

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Unknown (6272)
Proteomics (168)
Transcriptomics (140)
Genomics (21)
Metabolomics (10)

Organisms

Schizosaccharomyces pombe (135)
Human immunodeficiency virus 1 (135)
Oryza sativa Indica Group (135)
Sinorhizobium meliloti BL225C (135)
Sus scrofa domesticus (135)
Ostreococcus tauri (135)
Homo sapiens (97)
Mus musculus (41)
Arabidopsis thaliana (6)
Drosophila melanogaster (5)
Saccharomyces cerevisiae (4)
Scophthalmus maximus (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Rattus norvegicus (3)
Bifidobacterium breve UCC2003 (2)
Lotus japonicus (2)
plant metagenome (1)
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 (1)
Bifidobacterium bifidum (1)
Mus spretus (1)
Mycolicibacterium smegmatis (1)
Blumeria graminis (1)
Brassica napus (1)
Oryza sativa (1)
Pseudomonas putida (1)
Danio rerio (1)
Carica papaya (1)
Panulirus argus (1)
human metagenome (1)
Pyricularia oryzae (1)

Repository

biostudies-arrayexpress (147)
pride (135)
PeptideAtlas (17)
EGA (14)
MassIVE (12)
MetaboLights (8)
iProX (2)
GNPS (1)
jPOST (1)
MetabolomicsWorkbench (1)
PanoramaPublic (1)

Tissue

Others (17)
Cell culture (17)
Epithelial cell (10)
Plant cell (6)
Liver (6)
Cell suspension culture (5)
Blood (5)
Macrophage (4)
Heart (4)
Lung (4)
B cell (4)
Monocyte (4)
T cell (4)
Adult endothelial progenitor cell (3)
Pollen (3)
Blood serum (3)
Brain (3)
Blood plasma (3)
Leaf (3)
Antenna (2)
Bile duct (2)
Femoral muscle (2)
Subcutaneous adipose tissue (2)
White adipose tissue (2)
Cotyledon (2)
Skin (2)
Stem cell (2)
Embryo (2)
Saliva (2)
Leaf (1)

Disease

Breast cancer (4)
Melanoma (3)
Limb ischemia (2)
Lyme disease (2)
Obesity (2)
Alpha 1-antitrypsin deficiency (2)
Cholangiocarcinoma (2)
Lymphoma (2)
Influenza (2)
Glioblastoma (2)
COVID-19 (2)
Arrhythmias and right ventricular dysfunction (1)
Dystrophic (1)
Chronic lymphocytic leukemia (1)
Normal (1)
Pelger-Huet anomaly (1)
Breast ductal adenoma (1)
Anal canal squamous cell carcinoma (1)
Marfan syndrome (1)
Intracerebral hemorrhage (1)
Arthritis (1)
Idiopathic pulmonary fibrosis (1)
Toxoplasmosis (1)
Non-small cell lung carcinoma (1)
Severe acute respiratory syndrome (1)
Lung adenocarcinoma (1)
Osteosarcoma (1)
Systemic lupus erythematosus (1)
Atherosclerosis (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (136)
Shotgun proteomics (74)
Bottom-up proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (17)
Data-dependent acquisition (10)
Mass spectrometry (7)
Gel-based experiment (7)
Top-down proteomics (7)
SRM/MRM (5)
HDMSE (3)
SWATH MS (3)
All-ion fragmentation (2)
DiaPASEF (2)
Data-independent acquisition (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Infinium Omni2.5M (1)
AB 5500xl Genetic Analyzer (1)
Illumina (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
NMR spectroscopy (1)
EI (1)
RNA mass spectrometry (1)

Instrument Platform

LTQ Orbitrap Velos (10)
NextSeq 500 (9)
Illumina HiSeq 4000 (8)
Illumina HiSeq 2500 (7)
Illumina NovaSeq 6000 (6)
TripleTOF 5600 (6)
NextSeq 2000 (4)
Illumina HiSeq 2000 (3)
MS:1000419 (3)
G2565CA DNA microarray scanner (Agilent) for scanning. (2)
Chamber type: SureHyb hybridization chamber (Agilent). (2)
Illumina MiSeq (2)
MS:1000044 (2)
MS:1000031 (2)
Q Exactive (2)
LTQ Orbitrap (2)
CytoFLEX SRT Benchtop Cell Sorter (1)
Sony SH800S Cell Sorter (1)
Microarray scanner system (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)
G2565CA DNA microarray scanner (Agilent) (1)
ScanArray Lite [PerkinElmer] (1)
GenePix Professional 4200A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
6545 Q-TOF LC/MS (1)

Publication Date

2023 (40)
2022 (36)
2014 (27)
2012 (25)
2025 (22)
2021 (22)
2024 (21)
2016 (15)
2026 (15)
2019 (13)
2015 (13)
2013 (12)
2020 (10)
2017 (9)
2011 (9)
2010 (9)
2018 (8)
2009 (6)
2008 (5)
2007 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

Q9Y3B2 (17)
Q9NPD3 (17)
Q9Y371 (17)
Q9Y2Z0-2 (17)
Q9Y2Z0 (17)
Q9Y224 (17)
Q9UKY7 (17)
Q9UHV9 (17)
Q9UHD1 (17)
Q9NSD9 (17)
Q9NP79 (17)
Q9BRL6 (17)
Q9HB07 (17)
Q9HAV7 (17)
Q9H444 (17)
Q9GZZ1 (17)
Q99615 (17)
Q96I25 (17)
Q96AG4 (17)
Q969G3 (17)
Q92785 (17)
Q8WVJ2 (17)
Q8NFH5 (17)
Q86U42 (17)
Q04323 (17)
Q9UNP9 (17)
Q9UMS4 (17)
Q86V81 (17)
Q5VWC4 (17)
Q15181 (17)

ENSEMBL ID

ENSG00000170477 (17)
ENSG00000147251 (4)
ENSG00000247315 (3)

CHEBI ID

CHEBI:42111 (3)
CHEBI:28842 (3)
CHEBI:15428 (3)
CHEBI:16995 (3)
CHEBI:16857 (3)
CHEBI:15366 (3)
CHEBI:17351 (3)
CHEBI:24848 (2)
CHEBI:17992 (2)
CHEBI:17822 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:18186 (2)
CHEBI:17234 (2)
CHEBI:16750 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:15824 (2)
CHEBI:30911 (2)
CHEBI:17754 (2)
CHEBI:15741 (2)
CHEBI:17268 (2)
CHEBI:28044 (2)
CHEBI:16865 (2)
CHEBI:17568 (2)
CHEBI:27266 (2)
CHEBI:17203 (2)
CHEBI:15891 (2)
CHEBI:16449 (2)

Metabolite Name

Leucine (3)
Glycine (3)
Valine (3)
Tyrosine (3)
Serine (3)
Phenylalanine (3)
Linoleic acid (3)
Isoleucine (3)
Acetate (2)
Myo-inositol (2)
Threonic acid (2)
Oxalic acid (2)
Glycerol (2)
Sorbitol (2)
Ornithine (2)
Methionine (2)
Citric acid (2)
Stearic acid (2)
Lysine (2)
Asparagine (2)
Alanine (2)
Threonine (2)
Succinate (2)
Proline (2)
Palmitic acid (2)
Glutamine (2)
Glucose (2)
Glutamic acid (2)
Guanosine (2)
Sucrose (2)

Modification

4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (82)
RNA-seq of coding RNA (22)
Comparative genomic hybridization by array (7)
Hi-C (7)
ChIP-seq (6)
RNA-seq of non coding RNA (3)
Other (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
Animal - One-color microarray (1)
Human - Methylation microarray (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
4C (1)
ATAC-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (891)
2021 (828)
2023 (806)
2025 (736)
2024 (625)
2020 (527)
2019 (382)
2018 (283)
2017 (229)
2016 (212)
2015 (161)
2014 (151)
2026 (116)
2012 (115)
2013 (102)
2011 (68)
2010 (56)
2009 (35)
2008 (30)
2007 (13)
2006 (13)
2005 (12)
2000 (7)
2004 (5)
2003 (5)
2002 (2)
1999 (2)
1998 (2)
1997 (2)
1995 (1)

Lab affiliation

Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
Proteomics - Bioinformatics (4)
University of Cadiz (4)
UFIEC, Chronic Disease Programme, Functional Proteomics Unit, Instituto de Salud Carlos III (3)
Proteomics facility, Central Science Laboratory, University of Tasmania (3)
Infectious Diseases and Immunity in Global Health Program, Research Institute of the McGill University Health Centre, Montreal, Quebec, Canada (2)
Head of Lab of Cancer Signaling GIGA-institute Université de Liège CHU, B34, Tour GIGA (+2) B-4000 Liège (2)
Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
Centro de Investigaciones Biológicas Margarita Salas, CSIC, Madrid, Spain (2)
Department of Human Genetics and Biochemistry Sackler School of Medicine Tel Aviv University Tel-Aviv, Israel 69978 (2)
Microbial Evolution Laboratory, Centro de Astrobiologia (CSIC-INTA), 28850 Torrejón de Ardoz, Madrid, Spain (2)
Professor, Molecular Medicine Scientific Director UF Scripps Biomedical Research University of Florida (2)
Department of Molecular Medicine The Scripps Research Institute (2)
North Carolina State University (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
University of Cadiz and Institute of reserach and innovation in biomedical sciences of Cadiz (1)
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, SP, Brazil (1)
Blizard Institute, Centre for Genomics and Child Health, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, E1 2AT, UK (1)
Instituto de ecologia, A.C. (1)
Professor, Department of Biochemistry and Molecular Biology, University of Southern Denmark (SDU), Denmark (1)
Instituto Maimónides de Investigación Biomédica de Córdoba (IMIBIC), Córdoba. Department of Cell Biology, Physiology and Immunology, University of Córdoba, Córdoba. Hospital Universitario Reina Sofía, Córdoba, Spain. CIBER Fisiopatología de la Obesidad y Nutrición, Instituto de Salud Carlos III, Córdoba, Spain. (1)
Department of Cell Biology and Histology, Faculty of Medicine, Campus Mare Nostrum,University of Murcia, 30100 Murcia, IMIB, Spain (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, United Kingdom (1)
UPR 9002 CNRS-ARN Université De Strasbourg IBMC (1)
Plant Biology Section, School of Integrative Plant Science, Cornell University (1)
Universidad Nacional Autonoma de Mexico, Facultad de Quimica (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota (1)
Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, DD1 5EH, UK. (1)
DZNE - German Center for Neurodegenerative Diseases Munich Neuroproteomics Feodor-Lynen Str. 17 D-81377 Munich Germany (1)
Instituto de Ecología, A.C., (1)

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Superior metabolic improvement of polycystic ovary syndrome traits after GLP1-based multi-agonist therapy

Polycystic ovary syndrome (PCOS) is a heterogeneous condition, of polyhedric pathogenesis and clinical presentation, defined by oligo-/anovulation, hyperandrogenism and/or polycystic ovaries. Metabolic complications are highly common also in patients suffering PCOS, including obesity, insulin resist...

ORGANISM(S): Mus musculus (Mouse)

2024-10-02 | PXD044134 | Pride

Gene expression analysis of the wild-type (N3433) and pcnB mutant (IBPC903) using custom microarrays

The experiments were aimed at comparison of gene expression patterns of Escherichia coli pcnB mutant (IBPC903) lacking functional poly(A) polymerase I with its isogenic wild-type (N3433) strain grown in Luria-Bertani (LB) by using custom microarrays with improved detection of E. coli sRNAs.

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2017-02-28 | E-MTAB-5433 | biostudies-arrayexpress

Piper crocatum Ruiz & Pav. ameliorates wound healing through p53, E-cadherin and SOD1 pathways on wounded hyperglycemia fibroblasts.

Not available

S-EPMC8626332 | biostudies-literature

Excess degassing drives long-term volcanic unrest at Nevado del Ruiz.

Not available

S-EPMC10786892 | biostudies-literature

Pollen-Food Allergy Syndrome: From Food Avoidance to Deciphering the Potential Cross-Reactivity between Pru p 3 and Ole e 7.

Not available

S-EPMC11396898 | biostudies-literature

Adapting E-cigarette prevention programming to reach the latinx community.