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ProteomicsMetaProSIP protein-SIP data - MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics
MetaProSIP offers an automated high-throughput solution for 13C or 15N protein-SIP experiments. Labeled peptides are identified based on their unlabeled isotopologues. It calculates incorporation of heavy isotopes (RIA), the labeling ratio (LR) between proteins as well as additional shape properties...
ORGANISM(S): uncultured bacterium 
2014-11-27 | PXD000382 | Pride
Protein-sip Metaprosip 
ProteomicsPhoto-cross-linking mass spectrometry for single amino acid assignment of RNA-binding sites in RNA-binding proteins
Mass spectrometry data of peptide–RNA cross-links derived from complex biological systems. Yeast (pre-)mRNPs were isolated by TAP tag purification of Cbp20; human protein–RNA complexes were assembled on an aptamer tagged pre-mRNA. Isolated complexes were UV irradiated. For each of the aforementioned...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2014-08-07 | PXD000513 | Pride
Cross-linking Mass spectrometry Rnp Human 
ProteomicsDifferential Enzymatic 16O/18O Labelling for the Detection of Cross-Linked Nucleic Acid-Protein Heteroconjugates
Enzymatic differential 16O/18O labelling of nucelic acid-protein heteroconjugates. Heteroconjugates are identified against a complex background using an automated analysis workflow.
ORGANISM(S): Bos taurus (Bovine) 
2017-09-11 | PXD003673 | Pride
Lc-ms Cross-linking Nucelic acid-protein heteroconjugates 
TranscriptomicsGlobal effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
In Arabidopsis thaliana, four different DICER-LIKE (DCL) proteins have distinct, but partially overlapping functions in the biogenesis of microRNAs (miRNAs) and small interfering RNAs (siRNAs) from longer, non-coding precursor RNAs. To analyze the impact of different components of the small RNA (...
ORGANISM(S): Arabidopsis thaliana 
2010-05-07 | E-GEOD-21685 | biostudies-arrayexpress
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