Sasaki K K - OmicsDI

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Unknown (3243)
Transcriptomics (56)
Proteomics (29)
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Metabolomics (3)

Organisms

Homo sapiens (21)
Acidithiobacillus ferrooxidans ATCC 53993 (20)
Aerococcus urinae NBRC 15544 = CCUG 36881 (20)
Allexis (20)
Arabidopsis thaliana (20)
Cyanophora paradoxa (20)
Ensifer adhaerens (20)
Enterococcus faecalis (20)
Globicatella sanguinis (20)
Helianthus annuus (20)
Histomonas meleagridis (20)
Leishmania major strain Friedlin (20)
Listeria monocytogenes (20)
Lotus japonicus (20)
Marchantia polymorpha (20)
Medicago truncatula (20)
Methylohalobius crimeensis 10Ki (20)
Mus musculus (20)
Mycobacterium tuberculosis (20)
Mus musculus (19)
Arabidopsis thaliana (7)
Nicotiana tabacum (6)
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Schizosaccharomyces pombe (2)
Saccharomyces cerevisiae (2)
Sus scrofa (2)
Caenorhabditis elegans (2)
Oryza sativa (1)
Methanococcus maripaludis (1)

Organisms

Nicotiana tabacum (1)
Sus scrofa (1)
Rattus norvegicus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (57)
pride (20)
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geo (4)
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Tissue

Cell culture (3)
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Primary cell line (1)
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Disease

Acute leukemia (3)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (9)
Bottom-up proteomics (8)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)

Instrument Platform

Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - alternating - hilic (2)
Illumina HiSeq 4000 (1)
LTQ (1)
Gas Chromatography MS - (1)

Publication Date

2010 (12)
2012 (9)
2011 (8)
2026 (8)
2013 (7)
2014 (5)
2025 (5)
2022 (5)
2015 (4)
2009 (4)
2008 (4)
2024 (3)
2016 (3)
2007 (3)
2004 (3)
2020 (3)
2023 (2)
2018 (1)
2019 (1)
2021 (1)
2017 (1)

CHEBI ID

CHEBI:6650 (3)
CHEBI:32816 (3)
CHEBI:27897 (3)
CHEBI:30769 (3)
CHEBI:27266 (3)
CHEBI:26271 (3)
CHEBI:28300 (3)
CHEBI:29993 (2)
CHEBI:29988 (2)
CHEBI:15729 (2)
CHEBI:15366 (2)
CHEBI:33198 (2)
CHEBI:16349 (2)
CHEBI:17895 (2)
CHEBI:17925 (2)
CHEBI:16467 (2)
CHEBI:17295 (2)
CHEBI:15971 (2)
CHEBI:16643 (2)
CHEBI:18019 (2)
CHEBI:30915 (2)
CHEBI:17196 (2)
CHEBI:16857 (2)
CHEBI:17115 (2)
CHEBI:42111 (2)
CHEBI:16977 (2)
CHEBI:15603 (2)
CHEBI:17191 (2)
CHEBI:15741 (2)
CHEBI:15428 (2)

Metabolite Name

Xanthosine monophosphate (1)
Vanilmandelic acid (1)
ParaXanthine (1)
O-Phospho-Serine (1)
N-Acetyl-Ornithine (1)
Dopa (1)
3-Hydroxy-kynurenine (1)
3-Aminoglutaric acid (1)
2,3-Bisphosphoglyceric acid (1)
Glycyl-Glycine (1)
Ribose 5-phosphate (1)
2-Ketoadipic acid (1)
Thymidine monophosphate (1)
P-Aminohippuric acid (1)
Uridine monophosphate (1)
Dihydroorotic acid (1)
Inosine monophosphate (1)
Batyl alcohol (1)
4-Hydroxyphenylacetic acid (1)
3-Hydroxypyruvic acid (1)
Lactitol (1)
Methionine sulfone (1)
2-Aminooctanoic acid (1)
Cholecalciferol (1)
Cystamine (1)
Juniperic acid (1)
5-Aminovaleric acid (1)
2-Aminopimelic acid (1)
1,6-Anhydroglucose (1)
3-Aminopropanoic acid (1)

First Public Date

2014 (3)
2015 (1)

Study type

Transcription profiling by array (38)
ChIP-seq (4)
Unknown experiment type (3)
Methylation profiling by array (3)
RNA-seq of coding RNA (3)
RNA-seq of non coding RNA (2)
Comparative genomic hybridization by array (1)
Other (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (393)
2021 (355)
2025 (344)
2023 (336)
2024 (296)
2020 (281)
2019 (203)
2018 (199)
2017 (138)
2016 (130)
2015 (130)
2014 (85)
2013 (65)
2026 (58)
2011 (54)
2012 (50)
2010 (48)
2009 (26)
2008 (21)
2007 (15)
2006 (14)
2005 (13)
2001 (10)
2004 (8)
2003 (8)
2000 (7)
2002 (4)
1997 (3)
1999 (2)
1998 (2)

Lab affiliation

Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (4)
Department of Nephrology, Tokyo Medical and Dental University (TMDU), Tokyo 113-8510, Japan (2)
Leukemia Department, MD Anderson Cancer Center, Houston, TX 77030 (2)
Bavarian Center for Biomolecular Mass Spectrometry at Klinikum rechts der Isar Technical University of Munich (1)
Brigham and Women's Hospital, Harvard Medical School (1)
Centre for Drug Safety Science, Dept Pharmacology and Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
Centre for Drug Safety Science, Dept Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool (1)
Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Chiba, Japan. (1)
Department of Environmental Medicine and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai 980-8575, Japan. (1)
Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, New York, NY 10029, and Center for Advanced Research on Diagnostic Assays, Icahn School of Medicine at Mount Sinai, New York, New York, NY 10029 (1)
Laboratory of Clinical Pharmaceutical Science, Kobe Pharmaceutical University, Japan (1)
Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee (1)
Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST), Japan (1)
Proteomics Head, British Columbia Cancer Agency, Vancouver, Canada (1)
University of Southern California (1)

Tags

xref:PubMed:16180142 (1)
xref:PubMed:17761750 (1)
xref:PubMed:15897466 (1)

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Response of tobacco cells to Glucan elicitor

We have previously reported that the responses of tobacco tissues treated with AaGlucan are similar to those for laminarin [1]. To better understand the overall responses and signaling pathways in tobacco, we have identified here AaGlucan and laminarin early response genes, using a custom 16K BY-2 m...

ORGANISM(S): Nicotiana tabacum

2007-10-16 | E-GEOD-6948 | biostudies-arrayexpress

Unique metabolic regulation of micromeres contributes to their inductive signaling in the sea urchin embryo

In many multicellular organisms, a group of cells called organizers plays critical roles by sending signals to adjacent cells and controlling patterning events such as embryogenesis and tissue morphogenesis. Recent studies suggest that these organizers or inductive cells facilitate the downstream...

2025-07-07 | MTBLS5017 | MetaboLights

Cysteine-targeted proteomics analysis

The protein cysteine residue is one of the amino acids most susceptible to oxidative modifications, frequently caused by oxidative stress. Several applications have enabled cysteine-targeted proteomics analysis with simultaneous detection and quantitation. In this study, we employed a quantitative a...

ORGANISM(S): Homo sapiens (Human)

2016-07-18 | PXD004303 | Pride