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ProteomicsMachine Learning Based Classification of Diffuse Large B-cell Lymphoma Patients by their Protein Expression Profiles
Characterization of tumors at the molecular level has improved our knowledge of cancer causation and progression. Proteomic analysis of their signaling pathways promises to enhance our understanding of cancer aberrations at the functional level, but this requires accurate and robust tools. Here, we ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-30 | MSV000080813 | MassIVE
ProteomicsAge-dependent increase in Schmidt-Lanterman incisures and a Cadm4 associated membrane skeletal complex in fatty acid 2-hydroxylase deficient mice, a mouse model of spastic paraplegia SPG35
Fatty acid 2-hydroxylase (FA2H) is responsible for the synthesis of 2-hydroxylated fatty acids, which are a building block of sphingolipids. This 2-hydroxylated sphingolipids can be found in various tissues such as brain, spinal cord, skin, testis, ovary, kidney, stomach, or intestine with a notably...
ORGANISM(S): Mus musculus (Mouse) 
2022-04-22 | PXD030244 | Pride
Isobaric labelling Schmidt-lanterman incisures Mice Hereditary spastic paraplegia type 35 Sphingolipids Neurodegeneration Sciatic nerves Disease model Fa2h Tmt Time course Myelin Fatty acid hydroxylation Pns Fatty acid 2-hydroxylase 
TranscriptomicsE. coli BW25113 grown on minimal medium with different carbon sources
The goal of this analysis was to perform transcriptome-wide quantification of genes expressed in E.coli BW25113 when it is grown in M9 with 2.2 g/L glycerol, M9 + 3.3 g/L sodium pyruvate, or M9 + 2.2 g/L glycerol + 2 g/L casamino acids. With this data, we aimed to determine the fractional abundance ...
ORGANISM(S): Escherichia coli K-12 
2025-12-31 | E-MTAB-15217 | biostudies-arrayexpress
ProteomicsUbiquitinylation in cancer - LATS1 but not LATS2 represses autophagy by a kinase-independent scaffold function
Samples were subjected to sonication using Bioruptor (program mode – 30 sec on, 30 sec off, 10 cycles = 10 min). Samples were sonicated till a clear solution was obtained. After a short spin (5,000 rpm for 10 sec), the samples were heated for 10 minutes at 95°C at 300 rpm in a PCR 96 heating block. ...
ORGANISM(S): Homo sapiens (Human) 
2020-01-13 | PXD013159 | Pride
Beclin Mtor Glygly 
OtherMachine Learning Based Classification of Diffuse Large B-cell Lymphoma Patients by their Protein Expression Profiles.
Data from ProteomeXchange, PXD ID: PXD002052. Experiment: TRR37, file: folder summary. Published as part of Mol Cell Proteomics. 2015 Aug 26 . From the Abstract: {{i}} ... Here, we develop a state of the art quantitative mass spectrometric pipeline to characterize formalin-fixed paraffin-embedded (...
ORGANISM(S): Homo_sapiens_viruses, Human 
GPM32320017943 | GPMDB
Resource Reanalysis 
UnknownWild type ATTR amyloid fibril from senile systemic amyloidosis
Not available
EMPIAR-12217 | biostudies-other
UnknownVerticillium dahliae-Arabidopsis Interaction Causes Changes in Gene Expression Profiles and Jasmonate Levels on Different Time Scales.
Not available
S-EPMC5819561 | biostudies-literature
TranscriptomicsEbf2-GFP in IEO cells
Comparison of Ebf2-expressing bone marrow mesenchymal cells from Ebf2-GFP heterozgous and Ebf2-GFP homozygous (=knock-out) mice
ORGANISM(S): Mus musculus 
2017-12-17 | E-MTAB-2254 | biostudies-arrayexpress
UnknownATTRV122I amyloid fibrils from hereditary ATTR amloidosis
Not available
EMPIAR-11704 | biostudies-other
UnknownATTRV20I amyloid fibrils from hereditary ATTR amloidosis
Not available
EMPIAR-11700 | biostudies-other
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