Shah M M - OmicsDI

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Unknown (9131)
Proteomics (138)
Genomics (130)
Transcriptomics (118)
Metabolomics (21)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (156)
Allexis (118)
Arabidopsis thaliana (118)
Callinectes sapidus (118)
Cyanophora paradoxa (118)
Ensifer adhaerens (118)
Entamoeba histolytica (118)
Drosophila melanogaster (25)
Mus musculus (20)
Entamoeba histolytica (7)
Drosophila simulans (6)
Drosophila yakuba (5)
Arabidopsis thaliana (5)
Drosophila pseudoobscura (4)
Rattus norvegicus (4)
Paxillus involutus (4)
Zea mays (3)
Saccharomyces cerevisiae (3)
Paxillus involutus ATCC 200175 (2)
Vibrio parahaemolyticus (1)
Bradyrhizobium japonicum (1)
Bacteroides thetaiotaomicron (1)
Bubalus bubalis (1)
Salmonella enterica (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Listeria monocytogenes (1)
Streptococcus pneumoniae (1)
Mycobacterium tuberculosis H37Rv (1)
Escherichia coli K-12 (1)
Macleaya cordata (1)

Organisms

Paxillus involutus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (168)
pride (118)
EGA (77)
MetaboLights (18)
MassIVE (11)
PanoramaPublic (6)
GNPS (3)
ENA (3)
iProX (2)
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geo (1)

Tissue

Cell culture (23)
Heart (13)
Epithelial cell (11)
Blood plasma (8)
Brain (8)
Cerebrospinal fluid (7)
Blood serum (5)
B cell (4)
Fibroblast (4)
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Permanent cell line cell (3)
Cardiac muscle cell (2)
Embryonic stem cell (2)
Leukocyte (2)
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Ovary (2)
Skeletal muscle (2)
Aorta (1)
Astrocyte (1)
Blood (1)
Blood cell (1)
Blood platelet (1)
Bone marrow hematopoietic cell (1)
Breast cancer cell (1)
Cell suspension culture (1)
Chondrocyte (1)
Colon (1)
HeLa cell (1)
Homo sapiens protein (1)

Disease

Myocardial ischemia (5)
Prostate adenocarcinoma (4)
COVID-19 (3)
Cancer (3)
Cardiovascular system disease (3)
Brain cancer (2)
Lymphoma (2)
Malignant neoplasm of ovary (2)
Pancreatic cancer (2)
Renal fibrosis (2)
Skeletal muscle atrophy (2)
Intestinal type gastric cancer (1)
Not applicable (1)
Small interference (1)
Ovarian granulosa cell tumor, adult type (1)
Adult extraosseous osteosarcoma (1)
B-cell lymphoma (1)
Barrett's adenocarcinoma (1)
Barrett's esophagus (1)
Breast cancer (1)
Cervix carcinoma (1)
Colon cancer (1)
Duchenne muscular dystrophy (1)
Fanconi anemia (1)
Fibrolamellar carcinoma (1)
Heart failure (1)
Hepatitis (1)
Human immunodeficiency virus infectious disease (1)
Inflammation (1)
Melanoma (1)

Technology Type

Mass Spectrometry (118)
Shotgun proteomics (65)
Mass spectrometry (18)
Affinity purification coupled with mass spectrometry proteomics (17)
Gel-based experiment (13)
Bottom-up proteomics (12)
SWATH MS (8)
Data-dependent acquisition (7)
Data-independent acquisition (7)
Illumina Genome Analyzer II (3)
All-ion fragmentation (3)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
Illumina HiSeq 2500, ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, GenomeWideSNP_6-BirdseedV2 (1)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2- (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
Illumina Human Custom 1, Illumina Human-Ref-8 v3 beadchip, 2M and Human 610 Quad Custom arrays (1)
Illumina MiSeq (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Exactive (Thermo Scientific) (5)
Liquid Chromatography MS - negative - reverse phase (5)
Orbitrap Fusion Lumos (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap (2)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina NovaSeq X (1)
NextSeq 500 (1)
Q Exactive Plus (1)
Synapt XS (1)
TSQ Quantis (1)
LTQ (1)
LTQ Orbitrap (Thermo Fisher Scientific) (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Eclipse (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Synapt G2-S HDMS (1)
TripleTOF 5600 (1)
HILIC_Neg_Synapt_HDMS (1)
HILIC_Pos_Synapt_HDMS (1)
RP_Neg_Synapt_HDMS (1)
RP_Pos_Synapt_HDMS (1)
Gas Chromatography MS - positive (1)
Direct infusion MS - positive (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2010 (41)
2022 (29)
2014 (28)
2011 (27)
2013 (21)
2020 (20)
2025 (18)
2016 (15)
2015 (15)
2021 (14)
2024 (14)
2019 (13)
2017 (11)
2023 (11)
2026 (8)
2018 (8)
2012 (7)
2009 (7)
2005 (7)
2008 (6)
2007 (3)
2006 (1)
2003 (1)

CHEBI ID

CHEBI:15929 (8)
CHEBI:15560 (6)
CHEBI:16113 (6)
CHEBI:30746 (6)
CHEBI:16196 (6)
CHEBI:18183 (6)
CHEBI:16737 (6)
CHEBI:15756 (6)
CHEBI:133221|CHEBI:133222|CHEBI:27823 (5)
CHEBI:133220 (5)
CHEBI:133219 (5)
CHEBI:49265 (5)
CHEBI:18446|CHEBI:18436|CHEBI:18473 (5)
CHEBI:29043|CHEBI:38266|CHEBI:133208|CHEBI:133210|CHEBI:133211|CHEBI:80494 (5)
CHEBI:133207 (5)
CHEBI:85299 (5)
CHEBI:17154 (5)
CHEBI:116314 (5)
CHEBI:27266 (5)
CHEBI:48131 (5)
CHEBI:17490 (5)
CHEBI:17895 (5)
CHEBI:64563 (5)
CHEBI:18344 (5)
CHEBI:17687 (5)
CHEBI:30769 (5)
CHEBI:72736 (4)
CHEBI:40131 (4)
CHEBI:3291 (4)
CHEBI:71464 (4)

Metabolite Name

2-oxindole-3-acetic acid|5-methoxyindole-2-carboxylic acid|5-hydroxyindole-3-acetic acid (5)
Tuberonic acid (5)
Tuberonic acid methyl ester (5)
Jasmonic acid methyl ester (5)
3-oxo-2-(2-(Z)-pentenyl)-cyclopentane-1-octanoic acid (5)
Cucurbic acid|9,10-dihydrojasmonic acid (5)
Cis/trans-12-oxo-phytodienoic acid (5)
Cis-zeatin-O-glucoside|trans-zeatin-O-glucoside|cis-zeatin-9-glucoside|trans-zeatin-9-glucoside|cis-zeatin-7-glucoside|trans-zeatin-7-glucoside (5)
1-acetylindole-3-carboxaldehyde (5)
Valine (4)
Rutin (4)
Kynurenic acid (4)
Ornithine (4)
Benzoic acid (4)
Taurine (4)
Citric acid (4)
Oleic acid (4)
Uric acid (4)
Paracetamol (3)
Taurochenodeoxycholic acid (3)
Trolox (3)
Butylparaben (3)
LPE 18:2 (3)
Cholesterol (3)
L-Palmitoylcarnitine (3)
Glycocholic acid (3)
Docosahexaenoic acid (3)
Arachidonic acid (3)
Serine (3)
Palmitic acid (3)

IsPrivate

False (1)

First Public Date

2024 (2)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (62)
ChIP-seq (49)
RNA-seq of coding RNA (22)
Unknown experiment type (7)
Comparative genomic hybridization by array (6)
ChIP-chip by tiling array (5)
Methylation profiling by array (4)
Cell line - High-throughput sequencing (2)
Genotyping by array (2)
MicroRNA profiling by high-throughput sequencing (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Other (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (1252)
2025 (1115)
2023 (1093)
2021 (1031)
2024 (958)
2020 (775)
2019 (526)
2018 (430)
2017 (345)
2016 (341)
2015 (296)
2014 (242)
2013 (197)
2026 (148)
2012 (138)
2011 (136)
2010 (119)
2009 (59)
2008 (36)
2007 (16)
2005 (16)
2006 (12)
2004 (7)
2001 (4)
2003 (3)
2002 (1)
2000 (1)
1998 (1)
1997 (1)

Lab affiliation

King's College London (5)
Professor Dept. Cell Biology 615 Michael Street Whitehead 446 Atlanta, GA, 30322 Emory University (4)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Chemistry Department, Columbia University in the City of New York (2)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (2)
Institut für Kardiovaskuläre Physiologie, Goethe-Universität, Frankfurt am Main, Germany (2)
King's College London - Cardiovascular Division (2)
King's College London British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, King's College London, London, UK. (2)
Laboratory of Systems Pharmacology, Harvard Medical School, Boston, MA Department of Medicine – Renal Division, Brigham and Women’s Hospital, Boston, MA (2)
School of Biomedical Sciences, University of Plymouth, UK (2)
University of California San Francisco (2)
1 Department of Medicine - Western Health, The University of Melbourne, Melbourne, Australia The Australian Institute for Musculoskeletal Science (AIMSS), Western Health, Victoria University and The University of Melbourne, Melbourne, Australia 3 Institute for Health and Sport, Victoria University, Melbourne, Australia (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
1Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Antwerp University Faculty of Pharmaceutical, Biomedical and Veterinary Sciences Protein Chemistry, Proteomics and Epigenetic Signalling - PPES VITO, Unit Environmental Risk and Health (1)
Assistant Professor of Pediatrics Assistant Professor of Pharmacology & Toxicology Indiana University School of Medicine (1)
Associate Professor Molecular and Integrative physiology University of Michigan Ann Arbor MI 48109 USA (1)
Associate Professor, Head Cancer Proteomics Group, University of Queensland Diamantina Institute, Woolloongabba, QLD, 4102 (1)
Bradley Distinguished Professor Chair of Cancer Biology & Research Professor of Cell Biology Centre for Cancer Biology University of South Australia (1)
CNS Genetic Diseases Research, Neuroscience Therapeutic Area, Sanofi, Inc., Framingham, MA 01701 (1)
Cell Pathology Division 816F/ARC Children’s Hospital of Philadelphia The University of Pennsylvania 3615 Civic Center Blvd. 816F/ARC Philadelphia, PA 19104 Office: 267-426-2839 Fax: 267-426-5165 (1)
Cell and Chemical Biology Leiden University Medical Center The Netherlands (1)
Center for Alzheimer’s Disease and Related Dementias (CARD) National Institute on Aging (NIA) National Institutes of Health (NIH) (1)
Center for Proteome Analysis, Indiana University School of Medicine, Indianapolis, IN (1)
Centre for Genomics and Computational Biology. Barts Cancer Institute / Queen Mary University of London (1)
Centre for Inflammatory Diseases, Department of Medicine, School of Clinical Sciences at Monash Health, Monash University, Clayton, VIC, 3168, Australia. (1)
Clinical Chemistry Division, Department of Pathology, The Johns Hopkins University, Baltimore, MD, USA (1)
Department of Biochemistry & Molecular Biology Michigan State University (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)

Tags

xref:PubMed:22469289 (1)
xref:PubMed:38422122 (1)

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M. tuberculosis Rv3263 Knockout

We determine gene expression profile for the knockout of Rv3263 (DNA Methyltransferase) and compared to wildtype M. tuberculosis. Two RNA-Seq datasets are included: wildtype (H37Rv_SS1) and knockout (delta_Rv3263)

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2013-11-21 | E-GEOD-52551 | biostudies-arrayexpress

Frequency of mitochondrial m.1555A > G mutation in Syrian patients with non-syndromic hearing impairment.

Not available

S-EPMC5963064 | biostudies-literature

Ramanlal Bhikhabhai Shah

Not available

S-EPMC1388179 | biostudies-literature

Thiazide diuretics use & risk of falls & syncope among hypertensives: A retrospective cohort study.

Not available

S-EPMC11878675 | biostudies-literature

Transcriptional analyses of the ectomycorrhizal (ECM) fungus Paxillus involutus during growth on various lignocellulose soil substrates

In this study, examinations were performed on how the ECM fungus Paxillus involutus degrade complex, plant and litter material by using elemental analyses, FTIR spectroscopy, pyrolysis-GC/MS, and synchronous fluorescence spectroscopy together with microarray analyses screening 12,214 gene models, de...

ORGANISM(S): Paxillus involutus Paxillus involutus ATCC 200175

2012-02-01 | GSE34402 | GEO

Photocatalysis, photoinduced enhanced anti-bacterial functions and development of a selective m-tolyl hydrazine sensor based on mixed Ag·NiMn₂O₄ nanomaterials.

Not available

S-EPMC9056325 | biostudies-literature

1,25 (OH)₂D₃ treatment alters the granulomatous response in M. tuberculosis infected mice.

Not available

S-EPMC5048147 | biostudies-literature

HPV-DNA testing from self-sampled menstrual blood using M-strip: A proof-of-concept study on feasibility & acceptance of a novel biosampling method.

Not available

S-EPMC12550441 | biostudies-literature

Reanalysis of Data-dependent acquisition based proteomic datasets of Mycobacterium abscessus

Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium abscessus is essential. Therefore, we carried out reanalysis of publicly available M. abscessus proteomic dataset MSV000085363, PXD015680 and PXD...

ORGANISM(S): Mycobacterium abscessus (strain ATCC 19977 / DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543)

2024-03-07 | PXD045930 | Pride

Mettl14-mediated m⁶A modification ensures the cell-cycle progression of late-born retinal progenitor cells.

Not available

S-EPMC10543643 | biostudies-literature

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