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TranscriptomicsCell cycle dependent nucleosome occupancy at cohesin binding sites in yeast chromosomes
Nucleosome organization determines local chromatin structure and changes in nucleosome occupancy during the cell cycle are correlated with nuclear functions. We used oligonucleotide tiling arrays to analyze the cell cycle dependence of nucleosome occupancy at cohesin binding sites in yeast chromosom...
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-26 | E-GEOD-8130 | biostudies-arrayexpress
TranscriptomicsCoordinate Regulation of Metabolites Glycosylation and Stress Hormones Biosynthesis by TT8 in Arabidopsis
Secondary metabolites play a key role in coordinating ecology and defense strategies of plants. Diversity of these metabolites arise by conjugation of core structures with diverse chemical moieties, such as sugars in glycosylation. Active pools of phytohormones, including those involved in plant str...
ORGANISM(S): Arabidopsis thaliana 
2016-07-20 | E-GEOD-59048 | biostudies-arrayexpress
MetabolomicsMetabolomics analysis of RA vs healthy monocytes immediately following CD14+ MACS isolation

Rheumatoid arthritis (RA) monocytes are primed for inflammatory activation, but their disease-intrinsic molecular features have not been systematically profiled across omics layers. We aimed to define RA-associated alterations in primary human monocytes using an integrated multi-omics approach un...

2026-10-16 | MTBLS14228 | MetaboLights
ProteomicsH-NS LC-MS/MS of Edwardsiella piscicida
This study aims to investigate lysine acetylation sites on the H-NS protein in Edwardsiella piscicida. The H-NS protein was first purified, then subjected to SDS-PAGE, followed by gel band excision and LC-MS/MS identification.
ORGANISM(S): Edwardsiella tarda EIB202 
2024-05-24 | PXD047152 | Pride
Edwardsiella piscicida H-ns Lc-ms/ms 
GenomicsThe dynamics of DNA methylation fidelity during mouse embryonic stem cell renewal and differentiation
Purpose: we aimed to gain a genome-wide view of the dynamics in DNA methylation inheritance and define the factors associated with methylation fidelity. Methods: Using mouse embryonic stem cell (ES-E14TG2a) in both undifferentiated and differentiated states as a model system, we exploited the hairpi...
ORGANISM(S): Mus musculus 
2014-05-12 | E-GEOD-48229 | biostudies-arrayexpress
TranscriptomicsProfiling circulating microRNA expression in a mouse model of nerve allotransplantation (part 2)
Background. The lack of noninvasive biomarkers of rejection remains a challenge in the accurate monitoring of deeply buried nerve allografts and precludes optimization of therapeutic intervention. This study aimed to establish the expression profile of circulating microRNAs (miRNAs) during nerve all...
ORGANISM(S): Mus musculus 
2014-07-01 | E-GEOD-48971 | biostudies-arrayexpress
MetabolomicsA metabolome atlas of mouse brain on the global metabolic signature dynamics following short-term fasting
Calorie restriction (CR) or a fasting regimen is considered one of the most potent non-pharmacological interventions to prevent chronic metabolic disorders, ameliorate autoimmune diseases, and attenuate aging. Despite efforts, the mechanisms by which CR improves health, particularly brain health, ar...
2025-07-31 | MTBLS8006 | MetaboLights
MetabolomicsMetabolomic comparison of RA vs healthy monocytes undergoing different ex vivo activation conditions

Rheumatoid arthritis (RA) monocytes are primed for inflammatory activation, but their disease-intrinsic molecular features have not been systematically profiled across omics layers. We aimed to define RA-associated alterations in primary human monocytes using an integrated multi-omics approach un...

2026-10-16 | MTBLS14227 | MetaboLights
MetabolomicsMetabolic mapping of the human solute carrier superfamily

Solute carrier (SLC) transporters govern most of the chemical exchange across cellular membranes and are integral to metabolic regulation, which in turn is linked to cellular function and identity. Despite their key role, individual functions of the SLC superfamily members were not evaluated syst...

2025-07-22 | MTBLS11393 | MetaboLights
TranscriptomicsProfiling circulating microRNA expression in a mouse model of nerve allotransplantation (part 1)
Background. The lack of noninvasive biomarkers of rejection remains a challenge in the accurate monitoring of deeply buried nerve allografts and precludes optimization of therapeutic intervention. This study aimed to establish the expression profile of circulating microRNAs (miRNAs) during nerve all...
ORGANISM(S): Mus musculus 
2014-07-01 | E-GEOD-48969 | biostudies-arrayexpress
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