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GenomicsShot-gun stool metagenomics and colorectal cancer risk.
This study aims to identify metagenomics biomarkers in colorectal cancer (CRC). The study includes 156 samples of shot-gun stool metagenomics, corresponding to 51 patients with CRC, 54 patients with high-risk adenoma, and 51 healthy controls. The sequencing libraries were prepared with 2 µg of to...
EGAS00001007025 | EGA
ProteomicsTranslationalLandscape_HumanHeart
Here, we analyze the expression of predicted microproteins in human heart tissue and iPSC cardiomyocytes, using shot-gun proteomics and SRM. 4 identified candidates were functionally validated by interactome studies using AP-MS (affinity purification coupled to mass spectrometry). In addition, the i...
ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat) 
2019-06-04 | PXD012593 | Pride
Shot gun Heart tissue Targeted proteomics 
ProteomicsShot-gun proteomic analysis of S Cerevisiae, Candidatus Accumulibacter and Clostridium sacch.
Shot-gun whole cell lysate proteomics data from pure and enriched microbes were de-novo sequenced using PEAKS de Novo. The obtained peptide sequence lists serves as a test data for the peptide-centric taxonomy database Unipept.
ORGANISM(S): Clostridium saccharoperbutylacetonicum Candidatus Accumulibacter Saccharomyces cerevisiae (Baker's yeast) 
2021-03-15 | PXD016992 | Pride
Microbial cells Shot-gun proteomics 
GenomicsMetagenomic (WGS/Shot-gun) sequencing of Bovine Colostrum
Metagenomic (WGS/Shot-gun) sequencing of Bovine Colostrum Raw sequence reads
PRJNA1367381 | ENA
Genomics594633cc-f024-40c8-91da-1eeddd71f139 - samples
156 samples of shot-gun gut metagenomics, corresponding to 51 patients with CRCm 54 patients with adenoma, and 51 healthy controls
EGAD00001010068 | EGA
ProteomicsInvestigating the autotrophic and mixotrophic metabolism of an anammox bacterium
Anaerobic ammonium oxidizing (anammox) bacteria mediate a key step in the biogeochemical nitrogen cycle and have been applied worldwide for the energy-efficient removal of nitrogen from wastewater. However, outside their core energy metabolism, little is known about the metabolic networks driving an...
ORGANISM(S): Candidatus Kuenenia stuttgartiensis 
2021-07-30 | PXD016171 | Pride
Metabolism Anammox Shot-gun proteomics Microbial proteomics 
ProteomicsProfiling of the proteome of peripheral blood mononuclear cells of subjects diagnosed with primary open angle glaucoma
This study reports the first characterization of the intracellular proteome of peripheral blood mononuclear cells (PBMC) isolated from subjects diagnosed with primary open angle glaucoma (POAG)by shot-gun proteomics. Glaucoma is a chronic optic neuropathy and among the first causes of irreversible...
ORGANISM(S): Homo sapiens (Human) 
2025-09-22 | PXD059976 | Pride
Glaucoma Peripheral blood mononuclear cells Shot gun proteomics Immune system 
ProteomicsBarley seed malting analysis - Temporal analyses of barley malting stages using shot-gun proteomics
Quantitative comparison of proteomes generated during germination stages of Barley seeds
ORGANISM(S): Hordeum vulgare (Barley) 
2018-07-05 | PXD009103 | Pride
Barley Seed Germination Lc-ms/ms 
GenomicsWastewater sample
Shot gun metagenomic sequencing
PRJNA1235110 | ENA
TranscriptomicsLife on the edge: Functional genomic response of Ignicoccus hospitalis to cellular takeover by Nanoarchaeum equitans
Investigation of changes in global gene expression patterns as Ignicoccus hospitalis becomes increasingly populated by Nanoarchaeum equitans These microarray data are complemented by shot gun proteomics (see manuscript)
ORGANISM(S): Ignicoccus hospitalis Ignicoccus hospitalis KIN4/I 
2014-04-24 | GSE57033 | GEO
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