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MetabolomicsPhotorespiration is linked to DNA methylation by formate as one-carbon source.
DNA methylation is a key epigenetic modification regulating genome organization, stability, and gene expression. Stable DNA methylation critically relies on methyl groups provided through folate-mediated one-carbon (C1) metabolism, yet the origin and regulation of C1 supply remain elusive. Here we d...
2026-01-06 | MTBLS13444 | MetaboLights
ProteomicsAnammox enrichment culture glycoproteomics
The physiology of the planctomycetal anammox bacteria makes them particularly special because they share features with all three domains of life. Anammox bacteria have been reported recently to produce surface-layer proteins, which represent the outermost layer and provide structure, shape and prote...
ORGANISM(S): Candidatus Kuenenia stuttgartiensis Candidatus Brocadia sapporoensis 
2021-08-05 | PXD021600 | Pride
Mass binning Microbial glycoproteomics Anammox bacteria Metaproteomics 
UnknownEnhanced Nanoscale Ge Concentration Oscillations in Si/SiGe Quantum Well through Controlled Segregation.
Not available
S-EPMC11926967 | biostudies-literature
ProteomicsThe ALLPreT panel of legume allergen preparations: Optimization of total protein extracts and characterization of allergen composition, IgE-binding- and functional cross-linking properties, for the development of an ‘Allergenicity Prediction Toolbox for novel foods’
A protein-naming framework was established to determine the relative abundance of both allergens and non-allergenic proteins in 13 different legume seed extracts (roasted peanut, unroasted peanut, soybean, sweet blue lupine, winter pea, beluga lentils, chickpea, field bean, white kidney bean, fenugr...
ORGANISM(S): Cicer arietinum (Chickpea) (Garbanzo) Pisum sativum (Garden pea) Trifolium pratense Glycine max Arachis hypogaea (Peanut) Trigonella foenum-graecum Trifolium repens Medicago sativa (Alfalfa) Lupinus angustifolius Phaseolus vulgaris (Kidney bean) (French bean) Vicia faba Lens culinaris 
2026-10-01 | PXD079632 | Pride
Allergenicity assessment Proteomics Allpret Data independent acquisition Mass spectrometry Allergen extracts Legumes Ige Food allergy 
UnknownRegulation of the Ebola Virus VP24 Protein by SUMO.
Not available
S-EPMC6912094 | biostudies-literature
UnknownA Transcriptional Map of Human Tonsil Architecture: Beyond the Sum of (Single Cell) Parts.
Not available
S-EPMC12790319 | biostudies-literature
ProteomicsSystematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis
We previously reported that Parkinson’s disease (PD) kinase LRRK2 phosphorylates a subset of Rab GTPases on a conserved residue in their switch-II domains (Steger, Tonelli et al., 2016) (PMID: 26824392). Here, we systematically analyzed the Rab protein family and found 14 of them (Rab3A/B/C/D, Rab5A...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2017-11-14 | PXD007214 | Pride
Proteomics Rabgtpases Lrrk2 Parkinson's disease 
UnknownA novel role for the late-onset Alzheimer's disease (LOAD)-associated protein Bin1 in regulating postsynaptic trafficking and glutamatergic signaling.
Not available
S-EPMC6785379 | biostudies-literature
TranscriptomicsNuclear tRNA sequestering slows aging by a mechanism similar to dietary restriction
Dietary restriction (DR) is the best-characterized intervention for slowing aging, and reduced signaling through the target of rapamycin (TOR) kinase is believed to be one of the key mechanisms by which DR extends life span in organisms from yeast to mammals. Here we describe a role for nuclear seq...
ORGANISM(S): Saccharomyces cerevisiae 
2015-02-03 | E-GEOD-37241 | biostudies-arrayexpress
MetabolomicsMetabolic memory underlying minimal residual disease in breast cancer

Tumor relapse from treatment-resistant cells (minimal residual disease, MRD) underlies most breast cancer related deaths. Yet, the molecular characteristics defining their malignancy have largely remained elusive. Here we integrated multi-omics data from a tractable organoid system with a metabol...

2021-09-14 | MTBLS1507 | MetaboLights
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