Sort   by:  
 Page size 
ProteomicsMS1Connect: a mass spectrometry run similarity measure
Researchers may be interested in finding proteomics runs, which have been deposited into online repositories, that are similar to their own data. However, it is difficult to measure the similarity of a pair of proteomics runs. Here, we present a new method, MS1Connect, that only uses intact peptide ...
ORGANISM(S): Porphyrobacter sp. WLSH-3 Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028 Nicotiana benthamiana Bacillus thuringiensis Escherichia coli Bacillus cereus Bacillus thuringiensis str. Al Hakam 
2023-01-05 | PXD027791 | Pride
Bacteria Similarity 
ProteomicsInfluenza A hemagglutinin glycoproteomics similarity
Influenza A virus (IAV) mutates rapidly, preventing a single seasonal vaccine from targeting more than one strain, and year-to-year vaccine effectiveness is low. One challenge in designing effective vaccines is that genetic mutations frequently cause amino acid variations in IAV envelope protein hem...
ORGANISM(S): Viruses Homo sapiens (Human) Gallus gallus (Chicken) 
2020-07-03 | PXD018920 | Pride
Glycosylation Influenza a Lc-ms Similarity Glycopeptides 
ProteomicsImproving statistical certainty of glycosylation similarity between influenza A virus variants using data-independent acquisition mass spectrometry
The amino acid sequences of immunodominant domains of hemagglutinin (HA) on the surface of influenza A virus (IAV) evolve rapidly, producing viral variants. HA mediates receptor recognition, binding and cell entry, and serves as the target for IAV vaccines. Glycosylation, a post-translational modifi...
ORGANISM(S): Homo sapiens (Human) Canis familiaris (Dog) (Canis lupus familiaris) Gallus gallus (Chicken) 
2022-09-24 | PXD029700 | Pride
Influenza Dia Glycoproteomics Mass spectrometry Glycosylation similarity Hemagglutinin 
GenomicsBayesian Correlation is a robust similarity measure for single cell RNA-seq data
Bayesian Correlation is a robust similarity measure for single cell RNA-seq data
PRJNA554015 | ENA
GenomicsSimilarity Regression predicts evolution of transcription factor sequence specificity
Similarity Regression predicts evolution of transcription factor sequence specificity
PRJNA497296 | ENA
GenomicsClear-Cell Renal Cell Carcinoma Molecular Subtypes Differ by African and European Genetic Similarity
Clear-Cell Renal Cell Carcinoma Molecular Subtypes Differ by African and European Genetic Similarity
PRJNA1225288 | ENA
GenomicsCanine DUXC isoforms and functional similarity to human DUX4
Canine DUXC isoforms and functional similarity to human DUX4
PRJNA780786 | ENA
TranscriptomicsBayesian Correlation is a robust similarity measure for single cell RNA-seq data
Single-cell analysis of the transcriptome deepens our understanding of an individual cell's contribution to its microenvironment. Using single-cell analysis to study complex biological processes requires state-of-the-art computational tools. Assessing similarity is highly important for bioinformatic...
ORGANISM(S): Mus musculus 
2019-12-31 | GSE134134 | GEO
GenomicsDraft Microbiome
Similarity and competitive microbiomes
PRJEB63986 | ENA
GenomicsSimilarity of Gut Microbiota Composition between Donor and Recipient May Predict Graft Function after Transplant
Similarity of Gut Microbiota Composition between Donor and Recipient May Predict Graft Function after Transplant
PRJEB36456 | ENA
Sort   by:  
 Page size