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ProteomicsCFdb: A harmonized resource of co-fractionation mass spectrometry data
A total of 411 co-fractionation mass spectrometry (CF-MS) experiments were downloaded from public proteomics repositories such as PRIDE and MassIVE, then re-analyzed with MaxQuant. This repository provides complete MaxQuant outputs from all 411 experiments.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Mus musculus (Mouse) Trypanosoma brucei Oryza sativa (Rice) Drosophila melanogaster (Fruit fly) Caenorhabditis elegans Dictyostelium discoideum (Slime mold) Homo sapiens (Human) Zea mays (Maize) Triticum aestivum (Wheat) Escherichia coli Rattus norvegicus (Rat) Xenopus laevis (African clawed frog) 
2024-01-26 | PXD042664 | Pride
Cf-ms Protein correlation profiling Protein complexes Co-fractionation mass spectrometry Interactome 
UnknownA rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE).
Not available
S-EPMC5654062 | biostudies-literature
UnknownMapping protein states and interactions across the tree of life with co-fractionation mass spectrometry.
Not available
S-EPMC10724252 | biostudies-literature
UnknownGenomic data integration systematically biases interactome mapping.
Not available
S-EPMC6192561 | biostudies-literature
UnknownComparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm.
Not available
S-EPMC5559407 | biostudies-literature
UnknownContext-specific interactions in literature-curated protein interaction databases.
Not available
S-EPMC6194712 | biostudies-literature
ProteomicsSystematic reanalysis of co-fractionation mass spectrometry data
A total of 206 co-fractionation mass spectrometry (CF-MS) experiments were downloaded from public proteomics repositories such as PRIDE and MASSIVE, then re-analyzed with MaxQuant.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Zea mays (Maize) Homo sapiens (Human) Mus musculus (Mouse) Trypanosoma brucei Triticum aestivum (Wheat) Saccharomyces cerevisiae (Baker's yeast) Oryza sativa (Rice) Drosophila melanogaster (Fruit fly) Caenorhabditis elegans Dictyostelium discoideum (Slime mold) Xenopus laevis (African clawed frog) 
2021-04-20 | PXD022048 | Pride
Cf-ms 
UnknownPRISM 3: expanded prediction of natural product chemical structures from microbial genomes.
Not available
S-EPMC5570231 | biostudies-literature
UnknownGenomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM).
Not available
S-EPMC4787774 | biostudies-literature
UnknownDynamic rewiring of the human interactome by interferon signaling.
Not available
S-EPMC7294662 | biostudies-literature
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