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ProteomicsMultiplexed Proteome Profiling of Carbon Source Perturbations in Two Yeast Species with SL-SP3-TMT
Saccharomyces cerevisiae and Schizosaccharomyces pombe are the most commonly studied yeast model systems, yet comparisons of global proteome remodeling between these yeast species are scarce. Here, we profile the proteomes of S. cerevisiae and S. pombe cultured with either glucose or pyruvate as the...
ORGANISM(S): Homo sapiens (Human) 
2021-05-11 | PXD014546 | Pride
Sps-ms3 Cerevisiae Pombe Tmt Isobaric Pyruvate 
UnknownMultiplexed proteome profiling of carbon source perturbations in two yeast species with SL-SP3-TMT.
Not available
S-EPMC6889822 | biostudies-literature
UnknownStreamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3.
Not available
S-EPMC5994137 | biostudies-literature
ProteomicsSpin column-based prefractionation alternatives for Streamlined Tandem Mass Tag (SL-TMT) sample processing
Fractionation is essential to achieving deep proteome coverage for sample multiplexing experiments where currently up to 18 samples can be analyzed concurrently. However, prefractionation (i.e., upstream of LC-MS/MS analysis) with a liquid chromatography system constrains sample processing as only a...
ORGANISM(S): Homo sapiens (Human) 
2023-12-28 | PXD038383 | Pride
Faims Tmtpro Hprp Isobaric tagging Sax 
UnknownSpin column-based peptide fractionation alternatives for streamlined tandem mass tag (SL-TMT) sample processing.
Not available
S-EPMC9990130 | biostudies-literature
UnknownH/ACA snoRNA levels are regulated during stem cell differentiation.
Not available
S-EPMC7470967 | biostudies-literature
UnknownInvestigation of Proteomic and Phosphoproteomic Responses to Signaling Network Perturbations Reveals Functional Pathway Organizations in Yeast.
Not available
S-EPMC7382779 | biostudies-literature
ProteomicsInvestigation of Proteomic and Phosphoproteomic Responses to Signaling Network Perturbations Reveals Functional Pathway Organizations in Yeast
Governance of protein phosphorylation by kinases and phosphatases constitutes an essential regulatory network in eukaryotic cells. Network dysregulation leads to severe consequences and is often a key factor in disease pathogenesis. Previous studies revealed multiple roles for protein phosphorylatio...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2019-11-15 | PXD015575 | Pride
Streamlined tandem mass tag strategy Proteomics Protein regulation network Multi-notch ms3 Protein kinases and phosphatases Phosphoproteomics Phosphorylation signaling pathway organization Phosphorylation regulation network 
ProteomicsA Triple KnockOut Isobaric-labelling Quality Control Platform in an Integrated On-line Database Search
Sample multiplexing using isobaric tagging is a powerful strategy for proteome-wide protein quantification. One major caveat of isobaric tagging is ratio compression that results from the isolation, fragmentation, and quantification of co-eluting, near-isobaric peptides, a phenomenon typically refer...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-03-31 | PXD017803 | Pride
Tko standard  ion interference  tmt  itraq  sps-ms3  tvt  shiny application 
UnknownThe Role of Sugar Transporter Genes during Early Infection by Root-Knot Nematodes.
Not available
S-EPMC5796247 | biostudies-literature
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