Smith M K MK - OmicsDI

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Unknown (922)
Genomics (33)
Transcriptomics (16)
Metabolomics (7)
Proteomics (6)

Organisms

Homo sapiens (37)
Mus musculus (9)
Daphnia pulex (4)
Picea abies (1)
Streptococcus suis (1)
mixed sample (1)
Escherichia coli (1)
cellular organisms (1)

Repository

EGA (28)
biostudies-arrayexpress (21)
MetaboLights (7)
pride (4)
jPOST (1)
MassIVE (1)

Tissue

Cell culture (2)
Blood (1)
Brain (1)
Mesonephric duct (1)
Oligodendrocyte precursor cell (1)
T cell (1)
Uterine endometrium (1)

Disease

Collagen induced arthritis (1)
Alveolar soft part sarcoma (1)
Neurodevelopmental delay (1)
Schizophrenia (1)
Wolffian duct adenocarcinoma (1)

Technology Type

Illumina 15K (8)
Mass spectrometry (6)
Mass Spectrometry (4)
Shotgun proteomics (2)
Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Complete Genomics (1)
GenePix 4000A [Axon Instruments] (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL (1)
LTQ Velos (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2024 (5)
2011 (5)
2013 (3)
2022 (3)
2015 (2)
2014 (2)
2010 (2)
2009 (2)
2018 (2)
2025 (2)
2012 (1)
2008 (1)
2007 (1)
2021 (1)
2023 (1)
2020 (1)

CHEBI ID

CHEBI:16919 (4)
CHEBI:15354 (3)
CHEBI:16264 (3)
CHEBI:16467 (3)
CHEBI:16610 (3)
CHEBI:16704 (3)
CHEBI:16750 (3)
CHEBI:17368 (3)
CHEBI:29016 (3)
CHEBI:140761 (2)
CHEBI:15318 (2)
CHEBI:15414 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15882 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16027 (2)
CHEBI:16092 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16349 (2)
CHEBI:16411 (2)
CHEBI:16437 (2)
CHEBI:16449 (2)
CHEBI:16543 (2)
CHEBI:16708 (2)
CHEBI:16709 (2)
CHEBI:16737 (2)
CHEBI:16811 (2)

Metabolite Name

Aminoadipic acid (2)
Arginine (2)
Choline (2)
Creatine (2)
Methionine (2)
Proline (2)
Putrescine (2)
Spermidine (2)
Valine (2)
()-Octanoylcarnitine (1)
(+)-8'-hydroxyabscisic acid (1)
(-)-11-Hydroxy-9,15,16-trioxooctadecanoic acid (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-d-glucoside (1)
(-)-lupinine (1)
(11z,14z)-eicosadienoylcarnitine (1)
(1s,2r)-1,2-dihydrodibenzo[b,d]thiophene-1,2-diol (1)
(1s,2r,3s,5s,6s,16e,18e,20r,21s)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,16-trimethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl 2-methylpropanoate (1)
(2,7-dimethyloctahydro-1h-cyclopenta[c]pyridin-4-yl)methanol (1)
(2e)-2-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-ylidene]-1,6-dioxaspiro[4.4]non-3-ene (1)
(2r,3s)-2-methylcitric acid (1)
(2s,3r,4e,8e)-3-hydroxy-2-[methyl(stearoyl)amino]-4,8-octadecadien-1-yl hydrogen sulfate (1)
(2s,3s,4s,5r,6s)-6-(hydroxymethyl)-5-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)-5-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2,3,4,5-tetrol (1)
(2s,4ar,4br,6as,12bs,12cs,14as)-2-(2-hydroxy-2-propanyl)-12b,12c-dimethyl-3,4,5,6,6a,7,12,12b,12c,13,14,14a-dodecahydro-2h-chromeno[5',6':6,7]indeno[1,2-b]indole-4a(4bh)-carbaldehyde (1)
(2s,4s)-4-amino-2-hydroxy-2-methylpentanedioic acid (1)
(2s,4s)-pinnatanine (1)
(2z)-3-{5-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-yl]-2-furyl}acrylaldehyde (1)
(2z,4z)-2-hydroxyhexa-2,4-dienoic acid (1)
(3-methyl-2-butenyl)-benzene (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(3s,5r,6s,7e,9x)-7-megastigmene-3,6,9-triol 9-glucoside (1)

Study type

Transcription profiling by array (11)
ChIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
DNA-seq (1)
CUT&RUN (1)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (99)
2024 (92)
2023 (92)
2021 (85)
2025 (74)
2015 (59)
2019 (52)
2020 (46)
2014 (45)
2017 (42)
2012 (40)
2016 (40)
2013 (38)
2018 (38)
2011 (31)
2010 (21)
2009 (18)
2008 (12)
2026 (11)
2007 (5)
2006 (2)
2005 (1)

Lab affiliation

95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Laboratory of Neuroproteomics, Institute of Biology, Department of Biochemistry and Tissue Biology, University of Campinas (UNICAMP), R. Monteiro Lobato, 255 – Campinas/SP 13083-862, São Paulo, Brazil (1)

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Investigating the Succinylome and Malonylome of Schizophrenia

The succinylome and malonylome of human oligodendrocyte precursors (MO3.13 line) and postmortem brain tissue (whole lysates and mitochondrial enrichments) were studied with shotgun mass spectrometry. The goal was to determine what changes in oligodendrocytes are induced with the addition of the NMDA...

ORGANISM(S): Homo sapiens (Human)

2022-10-13 | PXD014188 | Pride

Hypusination Orchestrates the Antimicrobial Response of Macrophages

Innate responses of myeloid cells defend against pathogenic bacteria via inducible effectors. Deoxyhypusine synthase (DHPS) catalyzes the transfer of the N-moiety of spermidine to the lysine-50 residue of eukaryotic translation initiation factor 5A (EIF5A) to form the amino acid hypusine. Hypusinate...

2021-04-06 | MTBLS607 | MetaboLights

Whole-cell proteome of Promethearchaeum syntrophicum strain MK-D1

Identification of the proteins from tryptic digests of Promethearchaeum syntrophicum strain MK-D1 whole-cell proteome followed by nanoLC/OrbitrapFusion MS analysis.

ORGANISM(S): Cellular Organisms

2024-07-16 | PXD051006 | JPOST Repository

Hexameric VCP/p97 reprograms transcription by organizing enhancers with the ASPSCR1-TFE3 fusion oncoprotein

Aberrant transcription in alveolar soft part sarcoma (ASPS) is orchestrated by the fusion oncoprotein, ASPSCR1-TFE3, resulting from a gene fusion created by a t(X;17) chromosomal translocation. Proteomic analysis of co-immunoprecipitated ASPSCR1-TFE3 complexes revealed strong enrichment of VCP/p97, ...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2023-11-23 | PXD022515 | Pride

Asps Ip-ms Tmt

Sterols and oxysterols in plasma from Smith-Lemli-Opitz syndrome patients.

Not available

S-EPMC5018427 | biostudies-literature

A Phase II Trial of Neoadjuvant MK-2206, an AKT Inhibitor, with Anastrozole in Clinical Stage II or III PIK3CA-Mutant ER-Positive and HER2-Negative Breast Cancer.

Not available

S-EPMC6392430 | biostudies-literature

MK-8591 (4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine) Exhibits Potent Activity against HIV-2 Isolates and Drug-Resistant HIV-2 Mutants in Culture.

Not available

S-EPMC5527656 | biostudies-literature

The effects of a digital health intervention on patient activation in chronic kidney disease.

Not available

S-EPMC11558007 | biostudies-literature

Multiomic profiling of iron-deficient infant monkeys reveals alterations in neurologically important biochemicals in serum and cerebrospinal fluid before the onset of anemia

The effects of iron deficiency (ID) during infancy extend beyond the hematologic compartment and include short- and long-term adverse effects on many tissues including the brain. However, sensitive biomarkers of iron-dependent brain health are lacking in humans. To determine whether serum and cer...

2022-07-12 | MTBLS3388 | MetaboLights

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study.

Not available

S-EPMC4571080 | biostudies-literature

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