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MetabolomicsProbing the metabolic phenotype of breast cancer cells by multiple tracer stable isotope resolved metabolomics (part II)
Not available
ORGANISM(S): Homo sapiens 
ST000927 | MetabolomicsWorkbench
MetabolomicsProbing the metabolic phenotype of breast cancer cells by multiple tracer stable isotope resolved metabolomics (part I)
Not available
ORGANISM(S): Homo sapiens 
ST000926 | MetabolomicsWorkbench
ProteomicsDe novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition
Dataset generated and used in "De novo assembled databases allow species-specific protein-based stable isotope probing of microbiomes without prior knowledge of the community composition". For more information, see SDRF.sdrf.tsv
ORGANISM(S): Candidatus Kuenenia stuttgartiensis Bacteria 
2025-09-08 | PXD057215 | Pride
De novo peptide sequencing Protein-based stable isotope probing 
GenomicsAcidobacterial EPS degraders uraveled by stable isotope probing - Shotgun
Acidobacterial EPS degraders uraveled by stable isotope probing - Shotgun Metagenomics sequencing
PRJEB31257 | ENA
GenomicsQuantifying benthic bacterial activity under low oxygen using H218O stable isotope probing
Quantifying benthic bacterial activity under low oxygen using H218O stable isotope probing Raw sequence reads
PRJNA498588 | ENA
ProteomicsGroEL-proteotypbing-based stable isotope probing of Thauera aromatica K172, Pseudomonas putida KT2440, and Escherichia coli BL21(DE3)
This dataset has been used to establish GroEL-SIP, coupling a targeted proteotyping approach for assessing bacterial community compositions using the taxonomic marker protein GroEL with stable isotope probing to link the identified taxa to substrate assimilation. This dataset contains raw data of fo...
ORGANISM(S): Thauera aromatica K172 Escherichia coli BL21(DE3) Pseudomonas putida KT2440 Bacteria 
2024-10-17 | PXD048255 | Pride
Protein-sip Stable isotope probing Groel-proteotyping 
ProteomicsStable isotope probing with 13C-labeled bicarbonate/proteomics of cyanobacterial consortium collected from photobioreactors enriched from soda lake microbial mats in BC, Canada
In this work we used stable isotope probing/proteomics to study uptake of carbon sources by members of the cyanobacterial consortium. The database for protein identification was obtained from assembled metagenomes.
ORGANISM(S): Phormidium sp. OSCR 
2022-01-21 | PXD028578 | Pride
Heterotrophs Stable isotope probing Cyanobacteria 
Genomics
DNA sequences from stable isotope probing
PRJNA1381233 | ENA
GenomicsTranscriptome-stable isotope probing provides targeted functional and taxonomic insights into hypoxic pollutant-degrading aquifer microbiota
Transcriptome-stable isotope probing provides targeted functional and taxonomic insights into hypoxic pollutant-degrading aquifer microbiota
PRJNA489848 | ENA
ProteomicsMock microbial community with spike-ins of 13C-labeled Escherichia coli cells for benchmarking of protein-based stable isotope probing proteomics (Protein-SIP)
This dataset is part of a study aimed at developing algorithms for the quantification of stable isotope content in microorganisms in microbial communities after labeling them with stable isotope-labeled substrates. For this dataset Escherichia coli cultures were labeled with different percentages (1...
ORGANISM(S): Escherichia coli 
2022-12-30 | PXD024174 | Pride
13c Carbon 13 Stable isotope probing Stable isotope Protein-sip 1d-lc 
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