Stage stratification

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Unknown (2845)
Transcriptomics (171)
Genomics (152)
Proteomics (45)
Metabolomics (13)
Methylation profiling (8)
Clinical (4)
Other (4)
Genomic (2)

Organisms

Homo sapiens (154)
Schizophyllum commune H4-8 (35)
Mycobacterium tuberculosis SP7 (35)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (35)
Oryza sativa Japonica Group (35)
Rabbit calicivirus (35)
Crotalus durissus terrificus (35)
Eriocheir sinensis (35)
Candidatus Endoriftia persephonae (35)
Mycobacterium tuberculosis SP10 (35)
Mycobacterium tuberculosis SP13 (35)
Cotesia typhae (35)
Mycobacterium tuberculosis SP22 (35)
Cepaea nemoralis (35)
Geobacillus kaustophilus HTA426 (35)
Enterobacter ludwigii (35)
Trichoderma asperellum CBS 433.97 (35)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (35)
Arabidopsis thaliana (31)
Mus musculus (17)
Triticum aestivum (5)
Brassica napus (4)
Danio rerio (2)
Triticum turgidum (1)
x Triticosecale sp. (1)
Arabis alpina (1)
Macaca mulatta (1)
Solenopsis invicta (1)
Brachypodium distachyon (1)
synthetic construct (1)

Organisms

Homo sapiens (79)
Mus musculus (10)
Arabidopsis thaliana (2)
Ovis aries (1)
Gallus gallus (1)
human gut metagenome (1)

Repository

ENA (124)
biostudies-arrayexpress (118)
geo (76)
pride (35)
EGA (18)
MetaboLights (13)
iProX (6)
MassIVE (3)
dbGaP (2)

Tissue

Blood plasma (6)
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Cell culture (5)
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Stromal cell (1)
Epididymal white adipose tissue (1)
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Bone marrow (1)
Blood serum (1)
Heart (1)
Rosette (1)
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Kidney (1)
Neutrophil (1)
T cell (1)
Blood (1)

Disease

Colorectal Neoplasms (3)
Colon cancer (3)
Hepatocellular carcinoma (2)
Parkinson's disease (2)
Breast cancer (2)
Healthy (1)
Serous ovarian cancer (1)
Neuroblastoma (1)
Inflammatory Bowel Diseases (1)
Colorectal adenoma (1)
Papillary thyroid carcinoma (1)
Alport syndrome (1)
Obesity (1)
Pancreas adenocarcinoma (1)
Inflammatory bowel disease (1)
Heart failure (1)
Colorectal cancer (1)
Malignant neoplasm of ovary (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (16)
Mass spectrometry assay (7)
Data-independent acquisition (7)
Data-dependent acquisition (6)
Bottom-up proteomics (6)
Mass spectrometry (4)
Top-down proteomics (4)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II, ILLUMINA (1)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Mass spectrometry imaging (1)
DiaPASEF (1)
SWATH MS (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse-phase (6)
Liquid Chromatography MS - negative - reverse-phase (6)
Illumina NovaSeq 6000 (5)
Illumina MiSeq (4)
NextSeq 500 (2)
Q Exactive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
IScan Illumina (1)
Illumina iScan (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 1000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
Orbitrap Eclipse (1)
LTQ Orbitrap (1)
Liquid Chromatography MS - - - micrOTOF-Q II ESI TOF (Bruker) (1)
Liquid Chromatography MS - negative - reverse phase - LTQ-Orbitrap (1)
Bruker (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2026 (38)
2013 (21)
2025 (20)
2024 (17)
2015 (17)
2014 (17)
2016 (12)
2011 (11)
2008 (11)
2022 (10)
2017 (10)
2010 (10)
2012 (8)
2020 (8)
2023 (7)
2018 (7)
2009 (7)
2019 (5)
2021 (5)
2007 (3)
2005 (3)
2006 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:30769 (3)
CHEBI:68455 (2)
CHEBI:68531 (2)
CHEBI:71018 (2)
CHEBI:70824 (2)
CHEBI:16024 (2)
CHEBI:17066 (2)
CHEBI:68447 (2)
CHEBI:70989 (2)
CHEBI:68444 (2)
CHEBI:4167 (2)
CHEBI:17786 (2)
CHEBI:64390 (2)
CHEBI:30751 (2)
CHEBI:15366 (2)
CHEBI:68499 (2)
CHEBI:16259 (2)
CHEBI:17405 (2)
CHEBI:68449 (2)
CHEBI:17385 (2)
CHEBI:20106 (2)
CHEBI:41941 (2)
CHEBI:1582 (2)
CHEBI:48430 (2)
CHEBI:32816 (2)
CHEBI:30915 (2)
CHEBI:17381 (2)

Metabolite Name

Succinic anhydride (3)
8-Hydroxyguanosine (3)
Suberic acid (3)
Porphobilinogen (3)
Citric acid (3)
L-Serine (3)
(+/-)8(9)-DiHET (2)
Taurohyocholic acid (2)
2-hydroxyphenylacetic acid (2)
L-Nicotianine (2)
7-O-Galloyl-sedoheptulose (2)
Ttatpn (2)
3-(3-Amino-3-carboxypropyl)uridine (2)
Vinaginsenoside R1 (2)
DHMBOA hexose (2)
1-Rhamnono-1,4-lactone (2)
Protocatechuic acid 4-glucoside (2)
Cytidine, 5-chloro-2',3'-dideoxy-3'-fluoro- (2)
9-Aminocamptothecin (2)
2-(4-Methyl-5-thiazolyl)ethyl octanoate (2)
O-feruloylquinate (2)
Beta-D-Glucopyranuronic acid (2)
Fluorothymidine (2)
Laccaic acid D (2)
Acridine carboxamide (2)
Valine-betaxanthin (2)
4-coumaroyl-4'-hydroxyphenyllactate (2)
Rapalexin B (2)
Cidofovir (2)
Alilusem (2)

First Public Date

2026 (34)
2025 (19)
2024 (16)
2014 (13)
2023 (9)
2020 (8)
2018 (5)
2019 (4)
2015 (4)
2022 (3)
2021 (3)
2017 (3)
2016 (2)
2013 (1)

Study status

Not provided (2)
Completed (2)

Study type

Transcription profiling by array (85)
RNA-seq of coding RNA (13)
Comparative genomic hybridization by array (6)
Methylation profiling by array (3)
Observational (3)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Plant - High-throughput sequencing (1)
Genotyping by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2025 (523)
2022 (359)
2021 (324)
2023 (319)
2024 (304)
2020 (261)
2019 (158)
2018 (137)
2026 (102)
2017 (89)
2016 (87)
2015 (69)
2014 (58)
2013 (47)
2012 (29)
2011 (29)
2010 (21)
2008 (17)
2009 (13)
2007 (6)
2006 (4)
2005 (3)
2004 (2)
2003 (1)

Lab affiliation

Proteomics of Stem Cells and Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany (5)
Basic medical college, Jiujiang University, China (1)
Chair, Dept of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Canada (1)
Lab head, WEHI, Melbourne, Australia (1)
Experimental Systems Immunology Laboratory, Max-Planck Institute of Biochemistry, Martinsried, Germany. (1)
Department of Molecular Biomedicine. Centro de Investigaciones BiolÃ³gicas Margarita Salas. CSIC. (1)
Department of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC (1)
Proteomics Platform cic bioGUNE Bizkaia Tech. Park Build. 800 Derio 48160 Spain (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany. & NNF Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), and Institute for Mitochondrial Diseases and Ageing, Medical Faculty, University of Cologne D-50931 Cologne, Germany. (1)
Center of Proteomics & metabolomics, Leiden University medical Center, Leiden, The netherlands (1)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, 38 Life Science Park Road, Beijing 102206, P.R. China (1)
Center for Translational and Clinical Research, Department of Proteomics, School of Medicine, University of Zagreb, Zagreb, Croatia (1)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, Madrid, Spain (1)
Professor in Translational Oncology Director of Postgraduate Teaching and Learning, School of Medicine Principal Investigator, Cancer Chemoradiation Research Group Department of Surgery, Trinity Translational Medicine Institute, Trinity St. James’s Cancer Institute, Rm 1.20, Trinity Centre for Health Sciences, Trinity College Dublin, St. James’s Hospital, Dublin 8, D08 W9RT, Ireland. (1)
Genomic Stability Lab (GSL), Manchester Cancer Research Centre, Division of Cancer Sciences, Faculty of Biology Medicine and Health, University of Manchester, UK (1)
Laboratory of Interactomics of Proteoforms, Institute of Biomedical Chemistry (1)
Prteomics Facility, Council of Scientific and Industrial Research (CSIR), Pretoria, South Africa (1)
Stoller biomarker discovery centre, University of Manchester, UK (1)
Evotec, Martinsried, Germany (1)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, 38 Life Science Park Road, Beijing 102206, P.R. China. (1)
Leiden University Medical Center, Center of Proteomics & Metabolomics, Imaging group (1)
Professor in Translational Oncology Director of Postgraduate Teaching and Learning, School of Medicine Principal Investigator, Cancer Chemoradiation Research Group Department of Surgery, Trinity Translational Medicine Institute Trinity College Dublin, St. James’s Hospital, Dublin (1)
Genetics Post-Graduation Program, Genetics Department, Federal University of Paraná, Curitiba, Brazil (1)
Manchester Cell-Matrix Centre, Division of Cell-Matrix Biology and Regenerative Medicine, The University of Manchester (1)
German Institute of Human Nutrition Potsdam-Rehbrucke, Nuthetal, Germany, Deutsches Herzzentrum der Charite - Medical Heart Center of Charite and German Heart Institute Berlin, Institute of Computer-assisted Cardiovascular Medicine, Berlin, Germany (1)
Principle Investigator (1)
University of Oxford (1)
IRCCS Istituto Giannina Gaslini (1)
IRCCS Istituto G Gaslini (1)

Location

China (2)
France (1)
United Kingdom (1)

Keyword

APREMEC, aspirin, colorectal cancer, adjuvant therapy, recurrence, metastasis, survival (1)
Multivisceral resection (1)
Metabonomics (1)
Systems biology (1)
Intelligent knife (1)
NMR (1)
Mass spectrometry (1)
Aspirin (1)
Prognosis (1)

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Transcription profiling of MYCN non-amplified stage 4S neuroblastomas

Molecular phenotype of MYCN non-amplified stage 4S neuroblastoma

ORGANISM(S): Homo sapiens

2009-05-05 | E-TABM-119 | biostudies-arrayexpress

Spatial characterization and stratification of colorectal adenomas by Deep Visual Proteomics

Background and Aims: Colorectal adenomas (CRAs) are precursor lesions that can progress to adenocarcinomas. Current clinical guidelines categorize patients into risk groups based on adenoma characteristics observed during index colonoscopy, but this may lead to overtreatment. Our aim was to establis...

ORGANISM(S): Homo sapiens (Human)

2024-08-04 | PXD046999 | Pride

NanoCMSer: A Clinically Applicable Stratification Tool for Stratification of Colorectal Cancer Samples [III]

PRJNA1085295 | ENA

Evaluation of LNR and modified N stage systems for prognostic stratification of metastatic lymph nodes in stage III colorectal Cancer.

Not available

S-EPMC12012119 | biostudies-literature

NanoCMSer: A Clinically Applicable Stratification Tool for Stratification of Colorectal Cancer Samples

PRJNA1084749 | ENA

Expression profiles of 186-gene signature in U.S. hepatitis C virus (HCV)-related liver cirrhosis

OBJECTIVE: The number of patients with HCV-related cirrhosis is increasing, leading to a rising risk of complications and death. Prognostic stratification in patients with early-stage cirrhosis is still challenging. We aimed to develop and validate a clinically useful prognostic index based on genom...

ORGANISM(S): Homo sapiens

2014-08-22 | E-GEOD-54100 | biostudies-arrayexpress

The prognostic and predictive value of a six-microRNA-based classifier in stage II colon cancer

microRNA profiling of colon tumor tissues vs adjacent normal tissues 40 paired tumor and adjacent normal tissues of stage M-bM-^EM-! colon caner

ORGANISM(S): Homo sapiens

2013-11-29 | E-GEOD-49246 | biostudies-arrayexpress

Combined Immunoscore for Prognostic Stratification of Early Stage Non-Small-Cell Lung Cancer.

Not available

S-EPMC7544833 | biostudies-literature

Expression profiles of 186-gene signature in Italian hepatitis C virus (HCV)-related liver cirrhosis

ORGANISM(S): Homo sapiens

2014-08-22 | E-GEOD-54099 | biostudies-arrayexpress