Stocker S S - OmicsDI

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Unknown (462)
Proteomics (10)
Transcriptomics (5)
Metabolomics (2)

Organisms

Mus musculus (4)
Homo sapiens (3)
Candida albicans (2)
Phaeobacter inhibens (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Bacteria (1)
Escherichia coli (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)

Repository

pride (10)
biostudies-arrayexpress (5)
MetaboLights (2)

Tissue

Cell culture (6)
Macrophage (2)
Breast (1)
Epithelial cell (1)
Fat cell (1)
Leukocyte (1)
Lung (1)
White adipose tissue (1)

Disease

Breast cancer (2)
Disease free (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (10)
Shotgun proteomics (8)
Mass spectrometry (2)
Bottom-up proteomics (2)
Data-dependent acquisition (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (1)
6520 Q-TOF LC/MS (Agilent) (1)
Gas Chromatography MS - positive (1)

Publication Date

2016 (5)
2020 (4)
2022 (2)
2026 (2)
2007 (1)
2023 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:15428 (1)
CHEBI:15741 (1)
CHEBI:15756 (1)
CHEBI:15940 (1)
CHEBI:15946 (1)
CHEBI:15978 (1)
CHEBI:16000 (1)
CHEBI:16113 (1)
CHEBI:16119 (1)
CHEBI:16199 (1)
CHEBI:16217 (1)
CHEBI:16335 (1)
CHEBI:16449 (1)
CHEBI:16610 (1)
CHEBI:16813 (1)
CHEBI:16865 (1)
CHEBI:16958 (1)
CHEBI:17113 (1)
CHEBI:17148 (1)
CHEBI:17151 (1)
CHEBI:17154 (1)
CHEBI:17234 (1)
CHEBI:17270 (1)
CHEBI:17306 (1)
CHEBI:17327 (1)
CHEBI:17351 (1)
CHEBI:17497 (1)
CHEBI:17505 (1)
CHEBI:17754 (1)
CHEBI:17822 (1)

Metabolite Name

Adenosine (2)
Alanine (2)
Cholesterol (2)
Glycerol (2)
Glycine (2)
Maltose (2)
Nicotinamide (2)
Threonine (2)
(+)-.alpha.-tocopherol (1)
(+)-catechin (1)
(+)-isocorydine (1)
(-)-.alpha.-kainic acid (1)
(-)-epigallocatechin (1)
(-)-myrtenol (1)
(2e,4e)-hexa-2,4-dienoic acid (1)
(2e,4e,12z)-n-(2-methylpropyl)octadeca-2,4,12-trienamide (1)
(3.beta.,5.alpha.)-4,4-dimethylcholesta-8,14,24-trien-3-ol (1)
(4r)-4-((1r,3s,5s,7r,9s,10s,12s,13r,14s,17r)-1,3,7,12-tetrahydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(r)-butyrylcarnitine (1)
(s)-cotinine n-oxide (1)
.alpha.-L-Glu-L-Tyr (1)
.alpha.-ionone (1)
.beta.-muricholic acid (1)
.beta.-nicotinamide adenine dinucleotide, reduced(NADH) (1)
.beta.-sitosterol (1)
.beta.-thujaplicin (1)
.delta.-dodecalactone (1)
.gamma.-aminobutyric acid (1)
.gamma.-l-glu-.epsilon.-l-lys (1)
.omega.-3 arachidonic acid (1)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (1)

Release Date

2023 (65)
2022 (63)
2025 (51)
2024 (47)
2021 (42)
2020 (26)
2016 (24)
2018 (21)
2017 (21)
2019 (20)
2026 (13)
2014 (13)
2015 (12)
2012 (10)
2011 (9)
2007 (7)
2013 (6)
2010 (6)
2006 (3)
1999 (2)
2009 (1)
2008 (1)
2005 (1)
2004 (1)
1998 (1)
1996 (1)

Lab affiliation

MRC Centre for Medical Mycology University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter EX4 4QD, UK (2)
1Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium (1)
Biotech Research & Innovation Center (BRIC), University of Copenhagen, Denmark (1)
Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, University of Sydney, Camperdown, NSW, Australia (1)
Faculty of Sciences, Department of Biochemistry and microbiology, Ghent University, Belgium (1)
Hannover Medical School (1)
Marine Chemistry and Geochemistry Woods Hole Oceanographic Institute (1)
Molecular Genome Analysis Deutsches Krebsforschungszentrum (DKFZ) Im Neuenheimer Feld 280 69120 Heidelberg Germany (1)
Walter Brendel Centre of Experimental Medicine Department of Cardiovascular Physiology and Pathophysiology Ludwig-Maximilians-University of Munich Germany (1)

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Transport stress induces paradoxical increases in airway inflammatory responses in beef stocker cattle.

Not available

S-EPMC12880702 | biostudies-literature

Randomized controlled trial of S-1 maintenance therapy in metastatic esophagogastric cancer - the multinational MATEO study.

Not available

S-EPMC5537937 | biostudies-literature

S-1 maintenance therapy in Caucasian patients with metastatic esophagogastric adenocarcinoma-final results of the randomized AIO MATEO phase II trial.

Not available

S-EPMC10373924 | biostudies-literature

Mechanistic Insights Into Post-Translational α-Keto-β-Amino Acid Formation by a Radical S-Adenosyl Methionine Peptide Splicease.

Not available

S-EPMC11879070 | biostudies-literature

Role of Mincle overexpression in pneumococcal pneumonia

Macrophage-inducible C-type lectin (Mincle) dependent sensing of pathogens trig-gers proinflammatory immune responses in professional phagocytes that contribute to protect the host against pathogen invasion. Here, we examined whether overex-pression of Mincle designed to improve early pathogen sensi...

ORGANISM(S): Mus musculus (Mouse)

2020-10-05 | PXD018752 | Pride

Salmonella Typhimurium SL1344 proteogenomics

We describe how searching chimeric spectra with post-processing including MS²PIP-derived features aids the identification of hypothetical and unannotated proteins. We apply our workflow to the well-characterized human bacterial pathogen Salmonella enterica serovar Typhimurium (S. Typhimurium) and va...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

2020-10-13 | PXD016377 | Pride

Proteogenomics Ribosome profiling Ribo-seq Post-processing Salmonella typhimurium sl1344

Altered Neuronal Discharge in the Organum Vasculosum of the Lamina Terminalis Contributes to Dahl Salt-Sensitive Hypertension.

Not available

S-EPMC10023399 | biostudies-literature

aroA-Deficient Salmonella enterica Serovar Typhimurium Is More Than a Metabolically Attenuated Mutant.

Not available

S-EPMC5013297 | biostudies-literature

Millisecond Hydrogen/Deuterium-Exchange Mass Spectrometry Approach to Correlate Local Structure and Aggregation in α-Synuclein.

Not available

S-EPMC9730295 | biostudies-literature