Superoxide - OmicsDI

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Technology Type

Mass Spectrometry (94)
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Instrument Platform

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Liquid Chromatography MS - positive - reverse-phase (7)
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Liquid Chromatography MS - positive - hilic (5)
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UNIPROT ID/AC

I1JBY6_SOYBN (2)
I1MV75_SOYBN (2)
K7MRI2_SOYBN (2)
I1N7R4_SOYBN (2)
C6SYN9_SOYBN (2)
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K7K663_SOYBN (2)
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K7LG05_SOYBN (2)
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I1JA87_SOYBN (2)
I1KCC4_SOYBN (2)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:7916 (6)
CHEBI:26984 (5)
CHEBI:16450 (5)
CHEBI:48430 (5)
CHEBI:16196 (5)
CHEBI:17750 (5)
CHEBI:30887 (5)
CHEBI:15756 (5)
CHEBI:18089 (5)
CHEBI:30769 (5)
CHEBI:28792 (4)
CHEBI:70958 (4)
CHEBI:28822 (4)
CHEBI:16556 (4)
CHEBI:17992 (4)
CHEBI:16192 (4)
CHEBI:30805 (4)
CHEBI:41321 (4)
CHEBI:18132 (4)
CHEBI:16796 (3)
CHEBI:18421 (2)
CHEBI:16240 (2)
CHEBI:61051 (1)
CHEBI:29191 (1)
CHEBI:18059 (1)
CHEBI:17879 (1)
CHEBI:30763 (1)
CHEBI:15379 (1)
CHEBI:16908 (1)
CHEBI:15846 (1)

Metabolite Name

Uridine (10)
Creatine (10)
Indole (9)
L-Phenylalanine (9)
Uracil (7)
Betaine (7)
L-Asparagine (7)
Undecanedioic acid (7)
Taurine (7)
Guanine (7)
Azelaic acid (7)
Creatinine (7)
L-Leucine (7)
Oleuropein (6)
Ketoleucine (6)
Thymine (6)
L-Proline (6)
Erucic acid (6)
Succinic acid (6)
Allantoin (6)
L-Histidine (6)
Choline (6)
Fumaric acid (6)
Pimelic acid (6)
3-Hydroxysebacic acid (6)
Isocitric acid (6)
Suberic acid (6)
Oleic acid (6)
L-Tryptophan (6)
Dodecanoic acid (6)

First Public Date

2014 (78)
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2018 (21)
2021 (19)
2020 (15)
2017 (15)
2019 (13)
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2016 (4)
2013 (4)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (2)

Study status

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Recruiting (1)
Completed (1)

Lab affiliation

Center for Biotechnology & Biochemical Engineering Amity Institute of Biotechnology Amity University Uttar Pradesh Sector-125, Noida-201313 (U.P.) India (2)
School of Tropical Agriculture and Forestry, Hainan University (2)
College of Pharmacy, Anhui University of Chinese Medicine, Hefei 230012, China. (1)
Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium (1)
University of Greifswald, Department of Microbial Proteomics, Institute of Microbiology, D-17489 Greifswald, Germany (1)
Department of Microbiology Guru Nanak Dev University Amritsar 143005 Punjab India (1)
Department of Biomedical Sciences for Health, University of Milan, 20133 Milan, Italy (1)
Lab no. 54, Division of Genetics, ICAR-Indian Agricultural Research Institute (1)
Chapman University School of Pharmacy (1)
Helmholtz Zentrum München, Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany (1)
Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha NE (1)
King's BHF Centre of Research Excellence, King's College London, London, UK (1)
School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332 (1)
Chemistry of Michigan State University (1)
Center for Genomic Regulation, 08003 Barcelona, Spain (1)
Vall d'Hebron Institute of Oncology (VHIO) (1)
Department of Neuroscience, School of Medicine, University of Florida (1)
Department of Biochemistry Biophysics and Molecular Biology, Iowa State University, Ames, IA, USA (1)
Proteome Sciences Plc., London (1)
Assistant Professor at the School of Biomedical Sciences and Department of Pathology, The University of Hong Kong, Hong Kong (1)
Assistant Professor at the School of Biomedical Sciences and Department of Pathology, The University of Hong Kong (1)
Research Unit in Microorganisms Biology (URBM), Narilis Institute, University of Namur, Namur, Belgium. (1)
Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Center, Slovak Academy of Sciences (1)
National Research Council Ottawa, Canada (1)
Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA (1)
Forest Genetics and Plant Physiology (1)
Medical Proteomics Unit, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand (1)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (1)
School of Biological Sciences, Victoria University of Wellington (1)
Plant Sciences University of Missouri (1)

Keyword

Ketotifen (1)
Leucovorin (1)
Fluorouracil (1)
Oxaliplatin (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (1)

Classification

bacteria (42)
fungi (8)
protozoa (2)
helminths (1)

Modification

2x(15)N labeled L-lysine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (157)
RNA-seq of coding RNA (18)
Unknown experiment type (6)
Interventional (4)
Other (2)
DNA-seq (2)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

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2006 (54)
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2004 (39)
2003 (31)
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2000 (19)
2002 (16)
1998 (12)
1999 (11)
1997 (3)

Location

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Iran (1)
Egypt (1)

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Mitochondrial superoxide dismutase controls metabolic plasticity in pancreatic cancer

Reactive oxygen species have been established to play a critical role in pancreatic carcinogenesis. One of the main antioxidant enzymes is mitochondrial superoxide dismutase (Sod2). Sod2 has been shown to affect tumor initiation and metastatic progression in various cancer types. The impact of Sod2 ...

ORGANISM(S): Mus musculus

2025-12-23 | E-MTAB-16320 | biostudies-arrayexpress

Arabidopsis thaliana Transcriptome under Salt Stress

CuZn-superoxide dismutase (CuZn-SOD) and ascorbate peroxidase (APX) constitute first line of defence against oxidative stress. In the present study, PaSOD and RaAPX genes from Potentilla atrosanguinea and Rheum australe, respectively were overexpressed individually as well as in combination in Arabi...

ORGANISM(S): Arabidopsis thaliana

2014-10-06 | E-MTAB-4434 | biostudies-arrayexpress

Utilizing Ion Mobility-Mass Spectrometry to Investigate the Unfolding Pathway of Cu/Zn Superoxide Dismutase

IMS-MS data for Cu/Zn-Superoxide Dismutase (from bovine erythrocytes). Experiments were conducted on two different IMS platforms (DTIMS and TIMS) to compare the CCS values obtained under different types of IMS. Three separate solution conditions were used for the DTIMS data in order to obtain CCS va...

ORGANISM(S): Bovine (from Erythrocytes)

MSV000086204 | MassIVE

Identification of factors involved in the adaptation to superoxide stress in pathogenic Leptospira

Pathogenic leptospires are responsible for the zoonotic disease leptospirosis. The clinical manifestations of this infection range from a febrile state to a severe life-threatening form characterized by multiple organ hemorrhages. More than one million cases of leptospirosis are currently reported a...

ORGANISM(S): Leptospira interrogans serovar Manilae

2025-07-10 | PXD055480 | Pride

Superoxide dismutase shapes manganese stoichiometry in Southern Ocean diatoms

Elemental stoichiometry of biomass is a focal point that connects different biogeochemical cycles. Yet, the mechanistic underpinnings of elemental stoichiometry are poorly quantified in many cases. We combined targeted and untargeted metaproteomics, Bayesian statistical modelling, and geochemical me...

ORGANISM(S): environmental samples <diatoms environmental samples <haptophytes

2026-08-13 | PXD076644 | Pride

Metaproteomics Southern ocean Superoxide dismutase Manganese

Mitochondrial superoxide-induced mitohormesis is mediated by citrate and cardioprotective

PRJNA1492060 | ENA

Mitochondrial superoxide-mediated mitohormesis protects against doxorubicin-induced cardiotoxicity [AcuteDoxo_RNAseq]

PRJNA1378563 | ENA

Mitochondrial superoxide-mediated mitohormesis protects against doxorubicin-induced cardiotoxicity [6Week_RNAseq]

PRJNA1378572 | ENA

Revisiting oxygen toxicity: evolution and adaptation to superoxide in a SOD-deficient bacterial pathogen

PRJNA1167678 | ENA

Mitochondrial superoxide dismutase controls metabolic plasticity in pancreatic cancer