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MetabolomicsIntegrated proteome and lipidome analyses place OCIAD1 at mitochondria-peroxisome intersection balancing lipid metabolism

OCIAD1 (Ovarian Cancer Immunoreactive Antigen Domain Containing 1) is a membrane protein largely localized to mitochondria, however, its function in health or disease is not well understood. To comprehensively characterize the molecular changes upon lack of OCIAD1, we used mass spectrometry to st...

2025-04-25 | MTBLS12329 | MetaboLights
ProteomicsGardnerella vaginalis cell surface shaving
Study of Gardnerella vaginalis cell surface proteome
ORGANISM(S): Gardnerella vaginalis 
2018-06-06 | PXD003192 | Pride
Gardnerella vaginalis surface proteome 
ProteomicsSurface proteome of large extracellular vesicles
The extracellular vesicle (EV) surface proteome (surfaceome) acts as a fundamental signalling gateway by bridging intra-and extracellular signalling networks, dictates EVs’ capacity to communicate and interact with its the/their environment, and is a source of potential disease biomarkers and thera...
ORGANISM(S): Homo sapiens (Human) 
2021-11-17 | PXD026658 | Pride
Proteomics Extracellular vesicles Large extracellular vesicles Interactome Surface 
ProteomicsCell Surface Protein Atlas - A mass spectrometric-derived cell surface protein atlas
Cell Surface Capture (Wollscheid et al., 2009, Nat.biotec.) was performed on various different cell types in order to characterize the cell surface proteome and to build the Cell Surface Protein Atlas.
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2016-02-16 | PXD000589 | Pride
Cspa Surfaceome Mass spectrometry Cell surface capture 
ProteomicsSurface proteome adaption of Staphylococcus aureus HG001 during biofilm formation
We applied an optimized biotinylation approach for quantitative GeLC-MS based analysis of the staphylococcal cell-surface proteome and analyzed the cytoplasmic protein fraction as well in order to elucidate proteomic differences between colony biofilms and planktonic cells.
ORGANISM(S): Staphylococcus aureus 
2015-11-13 | PXD001395 | Pride
Biotinylation approach Cell-surface proteome Colony biofilm 15n metabolic labeling Mass spectrometry Staphylococcus aureus 
GenomicsAzacitidine treated AML cells reveals highly variable cell surface proteome remodeling [Affymetrix]
Azacitidine treated AML cells reveals highly variable cell surface proteome remodeling [Affymetrix]
PRJNA507808 | ENA
GenomicsAzacitidine treated AML cells reveals highly variable cell surface proteome remodeling [Illumina]
Azacitidine treated AML cells reveals highly variable cell surface proteome remodeling [Illumina]
PRJNA507643 | ENA
ProteomicsY79 retinoblastoma cell line surface proteome
The proteins on the surface of Y79 retinoblastoma cell line were analyzed by cell surface biotinylation and streptavidin affinity purification.
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD039517 | Pride
Retinoblastoma Cell surface proteome 
ProteomicsRB383 retinoblastoma cell line surface proteome
The proteins on the surface of RB383 retinoblastoma cell line were analyzed by cell surface biotinylation and streptavidin affinity purification.
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD039518 | Pride
Retinoblastoma Cell surface proteome 
ProteomicsTracking drug action on the cell surface proteome
Endogenous ligands and drugs interact with the cell-surface proteome but hypothesis-free tracking of dynamic remodeling processes at the plasma membrane is challenging. We introduce cell surface thermal proteome profiling for comprehensive characterization of ligand-induced changes in protein abunda...
ORGANISM(S): Homo sapiens (Human) 
2020-10-26 | PXD016249 | Pride
Thermal proteome profiling Cell surface Plasma membrane 
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