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TranscriptomicsGenome-wide localization of ORC and MCM binding sites and identification of replication origins in S. pombe
DNA replication of eukaryotic chromosomes initiates at a number of discrete loci, called replication origins. Distribution and regulation of origins are important for complete duplication of the genome. Here, we determined locations of Orc1 and Mcm6, components of pre-replicative complex (pre-RC),...
ORGANISM(S): Schizosaccharomyces pombe 
2010-06-11 | E-GEOD-6523 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis roots from slim1 and the parental line grown +/-S condition
Plants utilize soil sulfate for production of sulfur-containing amino acids that serve as essential dietary sulfur sources for animals. Despite the global nutritional significance of this fundamental metabolic process in nature, transcription factors regulating the plant sulfur assimilation pathways...
ORGANISM(S): Arabidopsis thaliana 
2008-06-13 | E-GEOD-4455 | biostudies-arrayexpress
UnknownA chromosome-level genome assembly of the aphid Semiaphis heraclei (Takahashi).
Not available
S-EPMC12065819 | biostudies-literature
TranscriptomicsDe novo Assembly and Characterization of Swertia japonica Transcriptome for the Identification of Candidate Genes Involved in the Biosynthesis of Therapeutic Metabolites
Here, we performed deep transcriptome sequencing for the aerial-tissues and the roots of S. japonica, generating over 2 billion raw reads with an average length of 101 nt by using an Illumina paired-end sequencing by HiSeq2000 platform. Using a combined approach of three popular assemblers, de novo ...
ORGANISM(S): Swertia japonica 
2016-07-01 | E-GEOD-80057 | biostudies-arrayexpress
TranscriptomicsExpression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant
Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...
ORGANISM(S): Streptomyces avermitilis 
2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress
UnknownDiagnosis of an extremely rare pleomorphic adenoma of the breast with core needle biopsy: A case report.
Not available
S-EPMC6258873 | biostudies-literature
UnknownRole of sigma factors in controlling global gene expression in light/dark transitions in the cyanobacterium Synechocystis sp. strain PCC 6803.
Not available
S-EPMC2168720 | biostudies-literature
TranscriptomicsTranscription profiling of S. cerevisiae acs2Ts1 mutant
Wild-type and the acs2Ts1 mutant yeasts were shifted from 25deg to 37deg. After 60 minutes, Yeasts were harvested and divided into 2 x 2 cell samples. Total RNAs were purified from 4 populations. Experiment Overall Design: microarray data of 2 x 2 = 4 samples were background-corrected with RMA. Bec...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-12 | E-GEOD-2806 | biostudies-arrayexpress
TranscriptomicsGeneration of Induced Pluripotent Stem Cells using Recombinant Proteins
Groundbreaking work demonstrated that ectopic expression of four transcription factors, Oct4, Klf4, Sox2, and c-Myc, could reprogram murine somatic cells to induced pluripotent stem cells (iPSCs) (Takahashi and Yamanaka, 2006), and human iPSCs were subsequently generated using similar genetic manipu...
ORGANISM(S): Mus musculus 
2010-04-09 | E-GEOD-16062 | biostudies-arrayexpress
ProteomicsS. aureus drives expansion of low density neutrophils in the diabetic host
Abstract S. aureus is a major opportunistic pathogen infecting patients with diabetes. Increased mortality was observed following IV S. aureus infection in diabetic mice compared to non-diabetic controls, correlating with increased numbers of low density neutrophils (LDNs) and neutrophil extracellu...
ORGANISM(S): Mus musculus (Mouse) 
2019-04-26 | PXD012176 | Pride
Ms3 Ms2 Hcd Tandem mass tags Neutrophils S.aureus 
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