Tanaka K K - OmicsDI

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Unknown (7908)
Transcriptomics (147)
Proteomics (68)
Genomics (23)
Metabolomics (20)
Multiomics (2)
Models (1)

Organisms

Homo sapiens (84)
Mus musculus (65)
Andropogon gerardi (34)
Bacteria (34)
Canis lupus familiaris (34)
Cnidaria (34)
Eukaryota (34)
Fasciola (34)
Arabidopsis thaliana (10)
Saccharomyces cerevisiae (5)
Corynebacterium glutamicum (4)
Xenopus laevis (3)
cellular organisms (3)
Schizosaccharomyces pombe (2)
Rattus norvegicus (2)
Human immunodeficiency virus 2 (2)
Hymenochirus boettgeri (1)
Cyanidioschyzon merolae (1)
Manihot esculenta subsp. peruviana (1)
Citrus reticulata (1)
Zea mays (1)
Oryza sativa (1)
Vitis vinifera (1)
Oryza sativa Japonica Group (1)
Drosophila melanogaster (1)
Elephas maximus indicus (1)
Escherichia coli (1)
Mammuthus primigenius (1)
Synechocystis (1)
Solanum lycopersicum (1)

Organisms

Mus musculus (2)
unidentified (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (157)
pride (34)
jPOST (30)
MetaboLights (20)
EGA (9)
ENA (4)
MassIVE (3)
FAIRDOMHub (1)
geo (1)
PanoramaPublic (1)

Tissue

Cell culture (8)
Venom (5)
Brain (4)
Epithelial cell (4)
Colon (2)
Fibroblast (2)
Gland lumen (2)
HeLa cell (2)
Photosynthetic cell (2)
Seed (2)
Spleen (2)
B-lymphoma cell line (1)
Blood plasma (1)
Bone marrow (1)
Cell line cell (1)
Dendritic cell (1)
Egg (1)
Egg cell (1)
J-774 cell (1)
Kidney (1)
Leaf (1)
Liver (1)
Macrophage (1)
Macrophage cell line (1)
Peyers gland (1)
T-helper 1 cell (1)
T-helper 2 cell (1)
Th1-cell (1)
Th2-cell (1)
WEHI-231 cell (1)

Disease

Alzheimer's disease (2)
Squamous cell carcinoma (1)
Papillary thyroid carcinoma (1)
None (1)
Cardiovascular system disease (1)
Colon cancer (1)
Disease free (1)
Frontotemporal dementia (1)
Lymphoma (1)
Sjogren's Syndrome (1)
Synovial sarcoma (1)

Technology Type

Mass Spectrometry (34)
Mass spectrometry (20)
Shotgun proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (5)
Gel-based experiment (5)
SWATH MS (2)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
Illumina HiSeq 2500 (1)
Data-dependent acquisition (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Liquid Chromatography MS - positive - reverse phase (3)
6540 Q-TOF LC/MS (Agilent) (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
CytAssist (1)
Axon- GenePix4000B (1)
Illumina NovaSeq X (1)
GenePix 4000B (1)
Illumina HiSeq 2000 (1)
Impact II (1)
LTQ Orbitrap Velos Pro (1)
LTQ Orbitrap XL (1)
6550 Q-TOF LC-MS Agilent (1)
Thermo Scientific LTQ FT Ultra (1)
AccuTOF GC (Jeol) (1)
LTQ XL (Thermo Scientific) (1)
LTQ Orbitrap XL (Thermo Scientific) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
LTQ Orbitrap Classic (Thermo Scientific) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Gas Chromatography MS - (1)
AXIMA CFR (1)
Esquire 3000+ (1)

Publication Date

2014 (31)
2010 (27)
2013 (21)
2012 (20)
2015 (17)
2016 (15)
2025 (14)
2011 (13)
2023 (11)
2021 (11)
2024 (10)
2022 (10)
2009 (9)
2020 (8)
2019 (7)
2008 (5)
2007 (5)
2026 (5)
2017 (3)
2006 (2)
2018 (2)
2005 (1)

CHEBI ID

CHEBI:25094 (10)
CHEBI:17822 (10)
CHEBI:30769 (10)
CHEBI:28044 (10)
CHEBI:16811 (9)
CHEBI:16335 (9)
CHEBI:15741 (9)
CHEBI:22660 (8)
CHEBI:24898 (8)
CHEBI:22653 (8)
CHEBI:27897 (8)
CHEBI:28300 (8)
CHEBI:18012 (8)
CHEBI:6650 (8)
CHEBI:18237 (8)
CHEBI:26984 (7)
CHEBI:27266 (7)
CHEBI:17148 (7)
CHEBI:15428 (7)
CHEBI:25017 (7)
CHEBI:27570 (7)
CHEBI:7916 (7)
CHEBI:26986 (7)
CHEBI:16010 (7)
CHEBI:17154 (7)
CHEBI:16027 (7)
CHEBI:18257 (7)
CHEBI:26271 (7)
CHEBI:18186 (7)
CHEBI:17596 (7)

Metabolite Name

Citrate (5)
Inosine (4)
Succinate (4)
Malate (4)
ATP (4)
AMP (4)
ADP (4)
Ornithine (3)
NADP+ (3)
NAD+ (3)
UDP-glucose (3)
UTP (3)
CTP (3)
UDP (3)
PRPP (3)
IMP (3)
UMP (3)
N-Acetylglutamate (3)
2-Oxoglutarate (3)
Lysine (3)
Guanosine (3)
CDP (3)
NADPH (3)
Isocitrate (3)
GTP (3)
GMP (3)
GDP (3)
Nicotinate (3)
NADH (3)
Adenosine (3)

First Public Date

2014 (2)
2025 (1)
2019 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (94)
RNA-seq of coding RNA (11)
Methylation profiling by array (8)
ChIP-seq (7)
ChIP-chip by tiling array (6)
Comparative genomic hybridization by array (5)
Unknown experiment type (4)
RNA-seq of non coding RNA (4)
Transcription profiling by tiling array (3)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
Other (2)
MicroRNA profiling by array (2)
Methylation profiling by high throughput sequencing (2)
One-color microarray (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)

Release Date

2022 (909)
2025 (863)
2023 (840)
2021 (836)
2024 (701)
2020 (589)
2019 (457)
2018 (423)
2017 (414)
2016 (357)
2015 (306)
2014 (275)
2013 (174)
2012 (167)
2026 (137)
2011 (129)
2010 (114)
2009 (78)
2008 (54)
2007 (52)
2006 (31)
2004 (29)
2005 (28)
2003 (25)
2002 (21)
2001 (16)
2000 (16)
1999 (14)
1998 (7)
1997 (1)

Lab affiliation

Departamento de Bioquimica, Escola Paulista de Medicina, UniversidadeFederal de Sao Paulo, SP, Brazil (2)
WWU Muenster, Institute of Plant Biology and Biotechnology (2)
1Department of Neuropathology, Medical Research Institute, Tokyo Medical and Dental University (1)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland (1)
Biochemistry and Metabolism Department John Innes Centre Norwich Research Park Norwich, UK (1)
Biochemistry and Metabolism Department John Innes Centre Norwich UK (1)
Brigham and Women's Hospital (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Center for Medical Research & Development, Division of Translational Research, Osaka Medical and Pharmaceutical University, 2-7 Daigaku-machi,Takatsuki, Osaka 569-8686, Japan (1)
Centre de recherche hopital Maisonneuve Rosemont (1)
Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Chiba, Japan. (1)
Department of Neuropathology, Medical Research institute and Center for Brain Integration Research, Tokyo Medical and Dental University, Japan (1)
Department of biochemistry, Federal University of São Paulo, Brazil (1)
Division of Cancer Cell Biology, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan (1)
Eisai Co., Ltd. (1)
Escola Paulista de Medicina/UNIFESP (1)
Evolutionary and Translational Venomics Lab, Instituto de Biomedicina de Valencia, CSIC, Valencia, Spain (1)
Evolutionary and translational Venomics Lab, Instituto de Biomedicina de Valencia, CSIC, Valencia, Spain (1)
Evolutionary and translational venomics Lab, Instituto de Biomedicina de Valencia, CSIC (1)
Instituto Clodomiro Picado, Universidad de Costa Rica (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science (1)
Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Tokyo, 156-8506, Japan (1)
Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST), Japan (1)
NIH/NIDCR (1)
Neuroprotection Research Laboratory, Departments of Radiology and Neurology, Massachusetts General Hospital and Harvard Medical School, Charlestown, Massachusetts, USA (1)
Plant Genomic Network Research Team, RIKEN CSRS, JAPAN (1)
RIKEN RCAI (1)
School of Biological Science and Engineering, School of Chemical and Environmental Sciences, Shaanxi University of Technology, Hanzhong 723000, PR China (1)
The Institute of Cancer Research (1)

Tags

xref:PubMed:17913887 (1)
xref:PubMed:17763979 (1)
xref:PubMed:31391163 (1)

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Vitamin K intake and health, consideration from the epidemiological studies.

Not available

S-EPMC8482381 | biostudies-literature

Cytoplasmic Accumulation of Heterogeneous Nuclear Ribonucleoprotein K Strongly Promotes Tumor Invasion in Renal Cell Carcinoma Cells.

Not available

S-EPMC4699215 | biostudies-literature

Nrf2 Activation Sensitizes K-Ras Mutant Pancreatic Cancer Cells to Glutaminase Inhibition.

Not available

S-EPMC7918355 | biostudies-literature

Localization of ATP-sensitive K+ channel subunits in rat submandibular gland.

Not available

S-EPMC2874182 | biostudies-literature

Cysteine-targeted proteomics analysis

The protein cysteine residue is one of the amino acids most susceptible to oxidative modifications, frequently caused by oxidative stress. Several applications have enabled cysteine-targeted proteomics analysis with simultaneous detection and quantitation. In this study, we employed a quantitative a...

ORGANISM(S): Homo sapiens (Human)

2016-07-18 | PXD004303 | Pride

Hek293t Iodotmt6plex

Displacement and re-accumulation of centromeric cohesin during transient pre-anaphase centromere splitting

The ring-shaped cohesin complex links sister chromatids until their timely segregation during mitosis. Cohesin is enriched at centromeres, where it provides the cohesive counter-force to bi-polar tension produced by the mitotic spindle. As a consequence of spindle tension, centromeric sequences tran...

ORGANISM(S): Saccharomyces cerevisiae

2007-09-29 | E-GEOD-8661 | biostudies-arrayexpress

Hydroxyl-Group Identification Using O K-Edge XAFS in Porous Glass Fabricated by Hydrothermal Reaction and Low-Temperature Foaming.

Not available

S-EPMC6803955 | biostudies-literature

The effects of caffeine on ATP-sensitive K(+) channels in smooth muscle cells from pig urethra.

Not available

S-EPMC1572345 | biostudies-literature

Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin.

Not available

S-EPMC9938236 | biostudies-literature

Conserved structural regions involved in the catalytic mechanism of Escherichia coli K-12 WaaO (RfaI).