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UnknownEGGTART: A tool to visualize the dynamics of biophysical transport under the inhomogeneous l-TASEP.
Not available
S-EPMC8105713 | biostudies-literature
ModelsMcFarland2020 - Totally Asymmetric Simple Exclusion Process (TASEP) model describing the movement of particles (ribosomes) along a lattice (the mRNA)
A stochastic simulation of yeast translation using Total Asymmetric Simple Exclusion Principle (TASEP) principles, representing ribosomes, tRNAs, mRNAs, and a tRNA re-charging process involving aminoacyl tRNA synthetases
2020-02-05 | MODEL2001080004 | BioModels
UnknownA Modelling Framework Linking Resource-Based Stochastic Translation to the Optimal Design of Synthetic Constructs.
Not available
S-EPMC7826857 | biostudies-literature
UnknownThe crowding dynamics of the motor protein kinesin-II.
Not available
S-EPMC7018031 | biostudies-literature
UnknownUnbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data.
Not available
S-EPMC4537299 | biostudies-literature
UnknownmRNA translation and protein synthesis: an analysis of different modelling methodologies and a new PBN based approach.
Not available
S-EPMC4015640 | biostudies-literature
UnknownSlow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts.
Not available
S-EPMC8865691 | biostudies-literature
ProteomicsProtein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates
Although protein synthesis dynamics has been studied both with theoretical models and by profiling ribosome footprints, the determinants of ribosome flux along open reading frames (ORFs) are not fully understood. Combining measurements of protein synthesis rate with ribosome footprinting data, we he...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2019-09-10 | PXD014357 | Pride
Protein charge Yeast Translation Tasep Ribosomal proteins 
UnknownMcFarland2020 - Totally Asymmetric Simple Exclusion Process (TASEP) model describing the movement of particles (ribosomes) along a lattice (the mRNA)
Not available
MODEL2001080004 | biostudies-other
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