Tick - OmicsDI

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Unknown (5921)
Genomics (986)
Transcriptomics (545)
Proteomics (126)
Other (6)
Metabolomics (6)
Methylation profiling (4)
Models (2)
Clinical (2)
Genomic (1)

Organisms

Homo sapiens (144)
Mus musculus (109)
Drosophila melanogaster (48)
Saccharomyces cerevisiae (17)
Rhipicephalus microplus (17)
Bos taurus (17)
Schizosaccharomyces pombe (16)
Ixodes scapularis (16)
Caenorhabditis elegans (12)
Arabidopsis thaliana (10)
Danio rerio (9)
Candida albicans (8)
Hordeum vulgare (7)
Sus scrofa (7)
Canis lupus familiaris (7)
Zea mays (6)
Gallus gallus (6)
Rattus norvegicus (6)
Rickettsia rickettsii (6)
Bemisia tabaci (5)
Oryza sativa (5)
Daphnia magna (4)
Staphylococcus aureus (3)
Triticum aestivum (3)
Macrobrachium nipponense (2)
Manihot esculenta (2)
Cunninghamia lanceolata (2)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (2)
Schistosoma japonicum (2)
Brassica juncea (2)

Organisms

tick metagenome (39)
Homo sapiens (29)
Mus musculus (25)
Ixodes scapularis (21)
Rhipicephalus microplus (21)
Ixodes ricinus (19)
Amblyomma americanum (15)
Dermacentor variabilis (13)
Haemaphysalis longicornis (12)
Borreliella burgdorferi (9)
insect metagenome (9)
Bos taurus (7)
Dermacentor andersoni (6)
Tick-borne encephalitis virus (6)
Babesia bigemina (5)
Borreliella burgdorferi B31 (5)
Amblyomma maculatum (5)
Rhipicephalus sanguineus (5)
Ixodida (5)
Hyalomma dromedarii (5)
Theileria orientalis (5)
Babesia bovis (5)
Anaplasma phagocytophilum (4)
Dermacentor albipictus (4)
Borrelia (4)
Cavia porcellus (4)
Rickettsia rickettsii (3)
Ornithodoros moubata (3)
Borrelia miyamotoi (3)
Dermacentor reticulatus (3)

Repository

ENA (929)
biostudies-arrayexpress (492)
geo (121)
pride (82)
iProX (30)
EGA (6)
MassIVE (6)
MetaboLights (5)
BioModels (2)
jPOST (2)
PAXDB (2)
ExpressionAtlas (1)
dbGaP (1)
MetabolomicsWorkbench (1)

Tissue

Saliva (17)
Salivary gland (6)
Blood serum (6)
Midgut (5)
Cell culture (5)
Blood plasma (4)
Epithelial cell (3)
Blood (3)
Cerebrospinal fluid (2)
Skin (2)
Whole body (2)
Blood cell (2)
Blood (1)
Gut juice (1)
Synganglion (1)
Gametophyte (1)
Aorta endothelium (1)
Saliva-secreting gland (1)
Hemolymph (1)
Intestine (1)
Embryonic stem cell (1)
Extracellular vesicle (1)
Embryonic cell (1)
Early embryonic cell (1)
Ovary (1)
Plant cell (1)
Prokaryotic cell (1)
Fibroblast (1)
Primary cell (1)
Permanent cell line cell (1)

Disease

Severe acute respiratory syndrome (2)
Infiltrating ductal carcinoma (2)
Porphyria NOS (2)
Lyme disease (2)
Thrombocytopenia (2)
Tick-borne encephalitis (2)
Pseudomonas aeruginosa rsmA mutant infected (1)
Post-stasis (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Invasive Ductal Carcinoma (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infected (1)
Colorectal carcinoma (1)
IBDV infected (1)
Head and neck squamous cell carcinoma (1)
Gastrointestinal (1)
The study population will include patients with (1)
Fever (1)
Lymphosarcoma (1)
Tick borne (1)
Babesiosis (1)
Meningitis (1)
Parasitic infectious disease (1)
Tick infestation (1)
Human granulocytic anaplasmosis (1)
Wounds and Injuries (1)
Disease free (1)

Technology Type

Mass Spectrometry (83)
Shotgun proteomics (41)
Bottom-up proteomics (21)
Data-dependent acquisition (9)
SWATH MS (8)
Data-independent acquisition (6)
Gel-based experiment (5)
Mass spectrometry (4)
Mass spectrometry assay (1)
ESI (1)
Glycoproteomics (1)
Affinity proteomics (1)
MSE (1)
DiaPASEF (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (19)
Illumina HiSeq 2500 (16)
Illumina HiSeq 4000 (12)
NextSeq 550 (7)
Illumina NovaSeq 6000 (5)
AB SOLiD 4 System (4)
Illumina Genome Analyzer IIx (4)
NextSeq 500 (4)
Illumina Genome Analyzer II (3)
Illumina MiSeq (3)
Illumina TruSeq Small RNA Sample kit (2)
TRIzol reagent (2)
Axon GenePix 4000B scanning hardware (2)
Illumina NextSeq 500 (2)
Thermal cycler, Agilent BioAnalyzer 2100 (1)
Microcentrifuge, vortex spinner, pipettes, -80C freezer (1)
Zeiss Stereomicroscope, standard lab plasticware (1)
Agilent (1)
BD Vacutainer, 367814; ExoQuick (1)
Axon 4000B (1)
AB SOLiD System 3.0 (1)
GenePix Professional 4200A [Axon Instruments] (1)
Axon- GenePix4000B (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
Ion Torrent PGM (1)
Illumina MiniSeq (1)
R (1)

Publication Date

2014 (78)
2013 (74)
2012 (69)
2010 (63)
2015 (56)
2025 (39)
2021 (39)
2016 (34)
2011 (33)
2024 (30)
2023 (29)
2026 (27)
2022 (25)
2020 (23)
2017 (16)
2007 (16)
2019 (15)
2008 (15)
2009 (14)
2018 (12)
2006 (11)
2005 (4)
2004 (2)

UNIPROT ID/AC

Q0WB82 (2)
P0AAD4 (2)
Q7CH92 (2)
Q7CHI6 (2)
Q0WI04 (2)
P0AGD3 (2)
Q7CJI9 (2)
Q4Z2Z4 (2)
Q7CJ22 (2)
Q7CKU7 (2)
Q74WT5 (2)
Q0WJB5 (2)
P60752 (2)
Q0WH20 (2)
P0ABU7 (2)
Q0WIZ0 (2)
Q7CGI6 (2)
P0ABV2 (2)
Q0WBR9 (2)
Q7CH41 (2)
Q180F2 (2)
Q7CG73 (2)
P25519 (2)
P0C0L7 (2)
Q0WCN6 (2)
Q0WD20 (2)
Q0WAH3 (2)
P0ABI4 (2)
P13738 (2)
Q7CG77 (2)

CHEBI ID

CHEBI:25597 (2)
CHEBI:7644 (2)
CHEBI:28368 (2)
CHEBI:44505 (2)
CHEBI:71339 (2)
CHEBI:48622 (2)
CHEBI:58754 (2)
CHEBI:11993 (2)
CHEBI:20375 (2)
CHEBI:36148 (2)
CHEBI:20374 (2)
CHEBI:1838 (2)
CHEBI:24328 (2)
CHEBI:14323 (2)
CHEBI:39153 (2)
CHEBI:12156 (2)
CHEBI:20623 (2)
CHEBI:39151 (2)
CHEBI:2115 (2)
CHEBI:16120 (2)
CHEBI:18685 (2)
CHEBI:42060 (2)
CHEBI:342 (2)
CHEBI:44073 (2)
CHEBI:11002 (2)
CHEBI:15588 (2)
CHEBI:18686 (2)
CHEBI:133047 (2)
CHEBI:73912 (2)
CHEBI:17201 (2)

Metabolite Name

Cholesterol (3)
2-Aminoethane-1,1,1-Triol (1)
9-(2,3-Dihydroxy-3-Methylbutyl)Furo[3,2-G]Chromen-7-One (1)
2-Methyl-N-[(1-Methylbenzimidazol-2-Yl)Methyl]-7-Oxoazepane-2-Carboxamide (1)
4-Chloro-1H-Indole-3-Acetic Acid (1)
Bisindolylmaleimide Iv (1)
H-D-Arg(No2)-Oh (1)
6-Methyl-5,6-Dihydro-4H-1,3-Thiazin-2-Amine (1)
2-Propylthiazolo[4,5-C]Quinolin-4-Amine (1)
N'-Nitro-L-Arginine (1)
16Alpha_-Hydroxyprednisolone (1)
2-Chloro-6-Fluoro-N-(2-Hydroxy-2-Naphthalen-1-Ylethyl)Benzamide (1)
Nona-2,4,6-Trienoyl-Coa (1)
2-Hydroxypentyl Glucosinolate (1)
2-Methyl-4-Oxo-5-Propylthieno[3,2-C]Pyridine-3-Carboxylic Acid (1)
Galloyl Glucose (1)
N-(2-Methoxyphenyl)-6-(3-Phenylpiperazin-1-Yl)Pyridine-2-Carboxamide (1)
Arginine Chloromethyl Ketone (1)
4-Carbamimidoyl-L-Phenylalanine (1)
16(17)-Epoxy-21-Acetoxy-5-Pregnenolone (1)
Glu Arg Phe (1)
Ethyl-1-(2,4,6-Trihydroxy-3-Isobutyrylphenyl)Butyl]-4-Cyclohexene-1,3-Dione (1)
16,16-Dimethyl Prostaglandin E2 P-(P-Acetamidobenzamido) Phenyl Ester (1)
N-Docosahexaenoyl Aspartic Acid (1)
N-Propyl-L-Arginine (1)
3-[3-[3-Methyl-5-(Oxan-4-Yl)-1,2,4-Triazol-1-Yl]Pyrrolidin-1-Yl]Sulfonylpyridine (1)
1-[1-(3-Methoxyphenyl)-2,5-Dioxopyrrolidin-3-Yl]Piperidine-4-Carboxamide (1)
4-Aminoisoxazolidin-3-One (1)
(E)-8-(2-(4-(Diphenylamino)Benzylidene)Hydrazinyl)-N-Hydroxy-8-Oxooctanamide (1)
Arg Gln Leu (1)

First Public Date

2024 (124)
2026 (109)
2025 (105)
2013 (97)
2023 (86)
2022 (77)
2021 (66)
2020 (62)
2014 (47)
2019 (41)
2016 (31)
2018 (30)
2017 (30)
2015 (22)
2010 (2)

Modelling Approach

Constraint-based model (2)

Study status

Terminated (1)
Not yet recruiting (1)

Lab affiliation

Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (4)
Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branisovska 1160/31, 37005 Ceske Budejovice, Czech Republic (4)
Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX, USA (2)
Copenhagen University Hospital - Bispebjerg and Frederiksberg Hospital, Copenhagen, Denmark (2)
College of Veterinary Medicine, Xinjiang Agricultural University (1)
Bioengineering (1)
Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow G61 1QH (1)
RDM Division of Cardiovascular Medicine, University of Oxford, Oxford, United Kingdom. (1)
The University of Queensland, Queensland Alliance for Agriculture and Food Innovation, Centre for Animal Science (1)
The University of Queensland, Queensland Alliance for Agriculture and Food innovation, Centre for Animal Science (1)
Université Rouen Normandie, Laboratoire PBS, Plateforme proteomique PISSARO, 76821 Mont-Saint-Aignan cedex, France (1)
IPHC-DSA-LSMBO-UMR7178 Strasbourg (1)
The University of Southern Mississippi (1)
University of Surrey, School of Biosciences, Department of Microbial Sciences. (1)
State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China (1)
Institute of Parasitology, Centre for Biology, Academy of Science of the Czech Republic, Czech Republic Faculty of Science, University of South Bohemia in Ceske Budejovice, Czech Republic (1)
Department of Microbiology, Biochemistry and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103, USA (1)
Parasitology, University of São Paulo/Institute of Biomedical Sciences, Brazil (1)
UMR 117 CIRAD-INRA ASTRE Montpellier, France (1)
Entomology Dept., 740 Russell Labss, University of Wisconsin-Madison, USA (1)
Centre for Animal Science Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Australia (1)
Department of Veterinary Pathobiology College of Veterinary Medicine Texas A & M University College Station Texas USA ( lab head ) (1)
Systems Arbovirology, Leibniz Institute of Virology (LIV), Hamburg, Germany (1)
Departamento de Parasitologia Instituto de Ciências Biomédicas, Universidade de São Paulo Av. Prof. Lineu Prestes, 1374, sala 39, Sao Paulo, Brazil (1)
SaBio (Health and Biotechnology), Instituto de Investigación en Recursos Cinegéticos (IREC, CSIC-UCLM-JCCM), University of Castilla-La Mancha, 13071, Ciudad Real, Spain. (1)
Instituto de Ecología A.C. (1)
Universidad de Oviedo Area of Plant Physiology, Dept. BOS Catedrático R Uria s/n 33071 Oviedo Spain. (1)
UMB, Poland (1)
Experimental Systems Immunology, Max Planck Institute of Biochemistry (1)
Biobanking Group, Branch of IBMC "Scientific and Educatioanl Center" (1)

Keyword

Intestinal microbiota transplantation (1)

IsPrivate

False (2)

Submitter Keywords

FROG (2)
Not Peer Reviewed (2)

Classification

bacteria (86)
protozoa (20)
viruses (18)
fungi (1)

Modification

42.010565 (1)
15.994915 (1)
57.021464 (1)

Study type

RNA-seq of coding RNA (149)
RNA-seq of non coding RNA (132)
Transcription profiling by array (95)
ChIP-seq (22)
Other (20)
Methylation profiling by high throughput sequencing (15)
MicroRNA profiling by high throughput sequencing (6)
Ribo-seq (6)
Animal - High-throughput sequencing (4)
Cell line - High-throughput sequencing (4)
Genotyping by array (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
DNA-seq (3)
Methylation profiling by array (3)
GRO-seq (2)
Transcription profiling by SAGE (2)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
Proteomic profiling by array (2)
RNA-seq of total RNA (2)
Interventional (2)
Transcription profiling by high throughput sequencing (1)
MNase-seq (1)
Human - High-throughput sequencing (1)
Translation profiling (1)
High-throughput sequencing (1)
CLIP-seq (1)
Transcription profiling by RT-PCR (1)

Release Date

2021 (633)
2022 (617)
2023 (614)
2025 (583)
2024 (526)
2020 (466)
2019 (389)
2018 (309)
2016 (305)
2014 (301)
2017 (284)
2015 (259)
2013 (197)
2012 (171)
2010 (142)
2011 (137)
2009 (78)
2026 (64)
2007 (62)
2008 (55)
2006 (36)
2005 (36)
2003 (35)
2004 (30)
2001 (23)
2002 (17)
1999 (16)
2000 (14)
1998 (14)

Location

Australia (1)
United Kingdom (1)

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Simultaneous Membrane and RNA Binding by Tick-Borne Encephalitis Virus Capsid Protein

Tick-borne encephalitis virus is an enveloped, pathogenic, RNA virus in the family Flaviviridae, genus Flavivirus. Viral particles are formed when the nucleocapsid, consisting of an RNA genome and multiple copies of the capsid protein, buds through the endoplasmic reticulum membrane and acquires ...

2023-01-06 | MTBLS6076 | MetaboLights

Early immunologic events at the tick-host interface

Ixodes species ticks are competent vectors of tick-borne viruses including tick-borne encephalitis and Powassan encephalitis. Tick saliva has been shown to facilitate and enhance viral infection. This likely occurs by saliva-mediated modulation of host responses into patterns favorable for viral i...

ORGANISM(S): Mus musculus

2012-12-21 | E-GEOD-39100 | biostudies-arrayexpress

Integrated metabolomics, transcriptomics and proteomics identifies metabolic pathways affected by Anaplasma phagocytophilum infection in tick cells

Anaplasma phagocytophilum is an emerging zoonotic pathogen that causes human granulocytic anaplasmosis. These intracellular bacteria establish infection by affecting cell function in both the vertebrate host and the tick vector, Ixodes scapularis. Previous studies have characterized the tick transcr...

ORGANISM(S): Ixodes scapularis

2016-01-06 | E-GEOD-68881 | biostudies-arrayexpress

Transcriptional responses in bovine skin during blood feeding of the cattle tick, Rhipicephalus microplus.

We examined gene expression induced by Rhipicephalus microplus bites on host skin of tick-resistant and tick-susceptible breeds of bovines, Nelore and Holstein respectively, when they underwent a primary infestation.

ORGANISM(S): Bos taurus

2017-04-02 | E-MTAB-4908 | biostudies-arrayexpress

Evidence of the role of tick subolesin in gene expression

Subolesin is an evolutionary conserved protein that was recently discovered in Ixodes scapularis as a tick protective antigen and has a role in tick blood digestion, reproduction and development. In other organisms, subolesin orthologs may be involved in the control of developmental processes. Beca...

ORGANISM(S): Ixodes scapularis

2010-05-26 | E-GEOD-10222 | biostudies-arrayexpress

Metabolic pathways affected by Anaplasma in tick cells

ORGANISM(S): Ixodes scapularis (Black-legged tick) (Deer tick)

2015-10-05 | PXD002181 | Pride

Tick host range adaptation: changes in protein profiles in Ixodes scapularis and Amblyomma americanum saliva during stimulation to feed on different hosts

Understanding the molecular basis of how the tick adapts to feed on different animal hosts is central to understanding tick and tick-borne disease (TBD) epidemiology. Tick adaptation to feed on vertebrate hosts is regulated by tick secretion of multiple tick saliva proteins (TSPs) and other molecule...

ORGANISM(S): Ixodes scapularis (Black-legged tick) (Deer tick) Amblyomma americanum

2022-02-28 | PXD007712 | Pride

Tick-host relationship Saliva Tick Proteomic Host adaptation

Ixodes scapularis chemotactic protein identification

Tick proteins within a fraction from medium pressure liquid chromatography were identified as potential chemoattractants for Borrelia burgdorferi. The proteins in two replicate fractions were identified using LC-MS/MS.

ORGANISM(S): Ixodes scapularis (Black-legged tick) (Deer tick)

2021-09-08 | PXD011273 | Pride

Chemotaxis Ixodes scapularis Protein Tick

SAGE in Rhipicephalus (Boophilus) microplus following OP treatment of larvae from OP resistant/susceptible strains.

Organophosphate resistant and susceptible tick larvae from laboratory strains of the southern cattle tick, Rhipicephalus (Boophilus) microplus were exposed to low doses of the organophosphate (OP) acaricide, coumaphos. Serial Analysis of Gene Expression (SAGE) was used to analyze differential gene ...

ORGANISM(S): Rhipicephalus microplus

2008-05-14 | E-GEOD-10109 | biostudies-arrayexpress

RNA-seq of blood samples from bovines immunized with a multicomponent recombinant vaccine against cattle tick.

Tick infestations by Rhipicephalus microplus, the cattle tick, cause enormous losses to health and animal production. Ticks induce immune response in their hosts; therefore their immunobiological control is feasible. The available anti-tick vaccines display variable efficacy and short-lived, encoura...

ORGANISM(S): Bos taurus

2019-12-15 | E-MTAB-8022 | biostudies-arrayexpress

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