Tmrna - OmicsDI

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Unknown (190)
Genomics (33)
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Organisms

Escherichia coli (5)
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seawater metagenome (3)
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Trioza sp. 8 NS74B (3)
synthetic RNA (3)
Candidatus Thiosymbion (3)
Colletotrichum falcatum (3)
Bacillus subtilis subsp. subtilis str. 168 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Salmonella enterica (1)
Listeria monocytogenes EGD-e (1)
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Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)
Pseudomonas aeruginosa PA14 (1)
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 (1)
Candida albicans (1)
Pseudomonas aeruginosa (1)
Bacillus subtilis (1)
Aeromonas veronii (1)

Organisms

Streptococcus pyogenes (4)
Bacillus subtilis subsp. subtilis str. 168 (3)
Apilactobacillus micheneri (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Kutzneria chonburiensis (1)
Brevundimonas bullata (1)
Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 (1)
Pseudomonas aeruginosa PA14 (1)
Brucella abortus (1)
Staphylococcus hominis (1)
Bacillus subtilis (1)
Escherichia coli (1)
Staphylococcus aureus (1)

Repository

ENA (33)
geo (12)
biostudies-arrayexpress (10)
pride (3)
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Mass Spectrometry (3)
Mass spectrometry (2)
Shotgun proteomics (2)
Data-dependent acquisition (1)

Instrument Platform

BGISEQ-500 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
TripleTOF 5600+|1002584 (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

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2022 (4)
2010 (4)
2020 (4)
2021 (3)
2026 (3)
2009 (2)
2018 (2)
2013 (1)
2008 (1)

CHEBI ID

CHEBI:26876 (2)
CHEBI:144576 (2)
CHEBI:9665 (2)
CHEBI:141457 (2)
CHEBI:73762 (2)
CHEBI:50281 (2)
CHEBI:9453 (2)
CHEBI:34923 (2)
CHEBI:134468 (2)
CHEBI:141455 (2)
CHEBI:3219 (2)
CHEBI:73812 (2)
CHEBI:86545 (2)
CHEBI:75008 (2)
CHEBI:73928 (2)
CHEBI:141428 (2)
CHEBI:74063 (2)
CHEBI:42820 (2)
CHEBI:87685 (2)
CHEBI:86267 (2)
CHEBI:120 (2)
CHEBI:4591 (2)
CHEBI:8405 (2)
CHEBI:30764 (2)
CHEBI:7952 (2)
CHEBI:28941 (2)
CHEBI:74807 (2)
CHEBI:74059 (2)
CHEBI:47781 (2)
CHEBI:27407 (2)

Metabolite Name

Terpineol (2)
2-Hydroxy-3-methoxybenzoic acid (2)
(Z)-6-Octadecenoic acid (2)
L-Threonate (2)
Nitrotyrosine (2)
Tyr-Met (2)
His-Tyr (2)
Arg-Gln (2)
Bupropion (2)
Ser-Asp (2)
His-Glu (2)
Arg-Asp (2)
Arg-Trp (2)
(-)-Tylocrebrine (2)
Triadimefon (2)
Lavandulol (2)
Leu-Asp (2)
Tyr-Ser (2)
Tyr-Val (2)
Ile-Asn (2)
Ala-Pro (2)
Ethyl 3-hydroxybutyrate (2)
Dimethyl sulfone (2)
Phe-Glu (2)
3-Hydroxybenzoate (2)
Terfenadine (2)
Primaquine (2)
Thiamine monophosphate (2)
Vitamin K1 (2)
Glycogen (2)

First Public Date

2023 (7)
2026 (6)
2024 (3)
2022 (3)
2019 (3)
2018 (3)
2020 (2)
2013 (2)
2025 (1)
2021 (1)
2015 (1)
2014 (1)

Classification

bacteria (10)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA (3)
High-throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (19)
2023 (17)
2024 (13)
2020 (13)
2010 (12)
2021 (11)
2018 (10)
2013 (9)
2025 (9)
2019 (9)
2014 (9)
2011 (8)
2007 (8)
2009 (7)
2016 (7)
2015 (7)
2012 (7)
2017 (5)
2006 (5)
2008 (3)
2004 (3)
2002 (3)
2005 (2)
2026 (1)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

Department of Cellular & Molecular Physiology, Yale University School of Medicine, New Haven, CT 06520, USA Systems Biology Institute, Yale University, West Haven, CT 06516, USA (1)
Howard Hughes Medical Institute Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)

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Absence of tmRNA Increases the Persistence to Cefotaxime and the Intercellular Accumulation of Metabolite GlcNAc in Aeromonas veronii

Bacterial persisters are a small proportion of phenotypically heterogeneous variants with the transient capability to survive in high concentrations of antibiotics, causing recurrent infections in both human and aquatic animals. Transfer-messenger RNA (tmRNA), which was encoded by the ssrA ge...

2021-10-18 | MTBLS1182 | MetaboLights

Absence of tmRNA increases the persistence to cefotaxime by upregulating the metabolites GlcNAc in Aeromonas veronii

Bacterial persisters refer to a small proportion of phenotypically heterogeneous variants with transient capability for survival when exposing to high concentrations of antibiotic, which constitute the major cause for recurrent infections both in human and aquatic infections. In pathogenic bacter...

2020-01-10 | MTBLS1191 | MetaboLights

Label-free shotgun proteomics of tmRNA substrates enriched by immunoprecipitation

We used a combination of genetic and proteomic approaches to characterize tmRNA (ssrA) activity in the genome-reduced bacterium Mycoplasma pneumoniae. For this, we generated tmRNA mutants encoding a tag resistant to proteolysis. Endogenous protein tagging by the mutant tmRNA gene (ssrAmk) was then e...

ORGANISM(S): Mycoplasma pneumoniae (strain ATCC 29342 / M129)

2021-08-23 | PXD023973 | Pride