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ProteomicsGeLC-MS/MS of H37Rv and two clinical isolates of Mycobacterium tuberculosis
Clinical isolates were made available from an extensive longitudinal collection of M. tuberculosis isolates circulating in the Western Cape of South Africa. Clinical isolates SAWC3651 and SAWC3517, belonging to the LAM (lineage 4.3) genotype and IS6110 family 14 and 9, respectively, and M. tubercul...
ORGANISM(S): Mycobacterium Tuberculosis (ncbitaxon:1773) 
2017-06-30 | MSV000081205 | MassIVE
ProteomicsLarge-scale proteogenomics characterization of the Mycobacterium tuberculosis hidden proteome
Traditional genome annotation methods exclude Open Reading Frames shorter than 300 codons (smORFs), which leaves a substantial portion of the proteome overlooked. Proteogenomics is a multi-omics approach that merges genomics, transcriptomics and proteomics to identify proteoforms and unannotated pro...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2025-05-06 | PXD042958 | Pride
Proteogenomics Microproteins Tuberculosis Small orfs 
ProteomicsNon-labelled quantitative proteomic analysis of M. tuberculosis H37Rv
Mycobacterium tuberculosis is a pathogenic bacterium that was sequenced and annotated as early as 1998, but in recent years it has been found that its annotation is not complete. Therefore, we used a proteogenomics strategy to re-annotate Mycobacterium tuberculosis H37Rv, identifying 37 'new genes' ...
ORGANISM(S): Mycobacterium Tuberculosis H37rv 
PXD078311 |
ProteomicsMycobactrium tubrculosis Proteogenomics
Indepth proteomic profiling of Mycobacterium tuberculosis was performed fpr the purpose of genome annotation
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2018-09-06 | PXD010956 | Pride
Tuberculosis h37rv proteogenomics 
UnknownLarge-scale proteogenomics characterization of microproteins in Mycobacterium tuberculosis.
Not available
S-EPMC11682046 | biostudies-literature
ProteomicsProteogenomic analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster strains
Nowadays proteomics is the one of the major instruments for editing and correct decryption of genomic information. Genomic correction of socially significant pathogens, like Mycobacterium tuberculosis, is by far the most relevant. We conducted proteogenomic analysis of W-148 strain, which belong to ...
ORGANISM(S): Mycobacterium tuberculosis 
2018-10-08 | PXD009489 | Pride
Proteomics Proteogenomics Mycobacterium tuberculosis Label-free proteomic analysis Beijing b0/w148 
GenomicsProteogenomics of Mycobacterium tuberculosis clinical isolates
Elucidation of Strain Variation in Clinical Mycobacterium tuberculosis isolates using a Proteogenomic Approach
PRJEB21206 | ENA
ProteomicsSystem OMICs analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster
Mycobacterium tuberculosis Beijing B0/W148 is one of the most widely distributed clusters in the Russian Federation and in some countries of the former Soviet Union. Recent studies have improved our understanding of the reasons for the “success” of the cluster but this area remains incompletely stud...
ORGANISM(S): Mycobacterium tuberculosis 
2020-05-26 | PXD013509 | Pride
Proteomics Proteogenomics Mycobacterium tuberculosis Label-free proteomic analysis Beijing b0/w148 
Genomics
RNA-Seq of Mycobacterium tuberculosis
PRJNA1465112 | ENA
ProteomicsNovel Events, Gene Model Correction of Mycobacterium Avium by Proteogenomic Analysis
Mycobacterium avium is one of the prominent disease causing bacteria in humans. It causes lymphadenitis, chronic pulmonary and extrapulmonary and disseminated infections in adults, children and immunocompromised humans. M. avium has ~4,500 predicted gene models, out of which not all are identified a...
ORGANISM(S): Mycobacterium avium 104 
2023-03-17 | PXD032067 | Pride
Dia Mycobacterium avium Proteogenomics Variant calling Dda Lc-ms/ms 
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