Ultraflextreme - OmicsDI

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Proteomics (53)
Metabolomics (6)
Unknown (4)
Genomics (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (45)
Alteromonadales (45)
Candida albicans SC5314 (45)
Canis lupus familiaris (45)
Carya cathayensis (45)
Clostridioides difficile 630 (45)
Cyanophora paradoxa (45)
Ectopseudomonas oleovorans CECT 5344 (45)
Ensifer adhaerens (45)
Enterococcus faecalis (45)
Globicatella sanguinis (45)
Halictus scabiosae (45)
Histomonas meleagridis (45)
Human immunodeficiency virus 1 (45)
Listeria monocytogenes (45)
Listeria monocytogenes EGD-e (45)
Methylohalobius crimeensis 10Ki (45)
Mus musculus (45)
Mycobacterium tuberculosis (45)
Ophrys garganica (45)
Ophrys sphegodes (45)
Pseudomonas aeruginosa SJTD-1 (45)
Pseudomonas putida KT2440 (45)
Pyrococcus furiosus (45)
Rattus norvegicus (45)
Rhizobium sp. Leaf68 (45)
Schizosaccharomyces pombe 927 (45)
Sphingomonas sp. Leaf257 (45)
Staphylococcus aureus (45)
Xibalbanus tulumensis (1)

Organisms

Klebsiella pneumoniae (1)

Repository

pride (45)
MassIVE (8)
MetaboLights (6)
ENA (1)

Tissue

Cell culture (12)
Brain (7)
Epithelial cell (6)
Plant cell (6)
Kidney (4)
Spleen (3)
Breast cancer cell (2)
Cell suspension culture (2)
Cotyledon (2)
Early embryonic cell (2)
Embryo (2)
Fibroblast (2)
Soleus (2)
Blood (1)
Blood serum (1)
Bone (1)
Breast (1)
Bronchoalveolar lavage (1)
Colon (1)
Egg (1)
Endosperm (1)
Extracellular vesicle (1)
Flower bud (1)
Keratinocyte (1)
Liver (1)
Melanocyte (1)
Muscle (1)
Pancreas (1)
Permanent cell line cell (1)
T cell (1)

Disease

Breast cancer (3)
Disease free (2)
Melanoma (2)
Alcohol dependence (1)
Alzheimer's disease (1)
Azoospermia (1)
Cockayne syndrome (1)
Colon cancer (1)
Congenital myopathy 1A (1)
Hypersensitivity reaction type I disease (1)
Influenza (1)
Lymphocytic choriomeningitis (1)
Oligoasthenoteratozoospermia (1)
Sodium salt (1)
Tauopathy (1)
Trichothiodystrophy (1)
Triple-receptor negative breast cancer (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (45)
Gel-based experiment (14)
Top-down proteomics (14)
Mass spectrometry imaging (9)
Shotgun proteomics (7)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (3)
Bottom-up proteomics (2)
All-ion fragmentation (1)
MSE (1)

Instrument Platform

UltrafleXtreme (7)
Orbitrap Eclipse (5)
UltrafleXtreme MALDI-TOF MS (Bruker) (2)
Matrix-assisted laser desorption-ionisation imaging MS - (2)
MS Imaging - (2)
Bruker UltrafleXtreme (1)
Q Exactive HF (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2021 (10)
2025 (10)
2022 (8)
2020 (6)
2023 (5)
2019 (4)
2015 (4)
2024 (3)
2017 (3)
2016 (3)
2026 (2)
2018 (1)

CHEBI ID

CHEBI:189447 (1)
CHEBI:189446 (1)
CHEBI:189445 (1)
CHEBI:189444 (1)
CHEBI:189443 (1)
CHEBI:189442 (1)
CHEBI:189441 (1)
CHEBI:189439 (1)
CHEBI:134503 (1)
CHEBI:20582 (1)
CHEBI:50775 (1)
CHEBI:136247 (1)
CHEBI:137329 (1)
CHEBI:193350 (1)
CHEBI:134462 (1)
CHEBI:134448 (1)
CHEBI:66863 (1)
CHEBI:66865 (1)
CHEBI:66860 (1)
CHEBI:85827 (1)
CHEBI:66864 (1)
CHEBI:87257 (1)
CHEBI:166509 (1)
CHEBI:31134 (1)
CHEBI:28937 (1)
CHEBI:16547 (1)
CHEBI:36281 (1)
CHEBI:64446 (1)
CHEBI:66859 (1)
CHEBI:64423 (1)

Metabolite Name

Coniferaldehyde (1)
5-hydroxyconiferaldehyde (1)
Phosphatidylcholine(40:1) (1)
Phosphatidylcholine(40:3) (1)
Phosphatidylserine(40:9) (1)
Phosphatidylcholine(40:2) (1)
DMPE(40:10) (1)
Triacylglycerol(49:5) (1)
Glucosylceramide(42:2) (1)
Phosphatidylinositol(32:2) (1)
Phosphatidylglycerol(38:4) (1)
Phophatidylethanolamine(42:11) (1)
Phosphatidylserine(38:7) (1)
Phosphatidylcholine(38:1) (1)
Phosphatidylserine(36:4) (1)
Phosphatidylserine(36:5) (1)
Phophatidylethanolamine(40:10) (1)
Phosphatidylserine(34:3) (1)
Dimethylphosphatidylethanolamine 34:2 (1)
DAG(35:0) (1)
SM(d18:1/24:2) (1)
SM(d18:1/18:2) (1)
PE(O-38:7) (1)
5-hydroxyferulic acid (1)
PE(O-36:5) (1)
(+/-)5-HEPE / 5(S)-HEPE (1)
(+/-)5-HEPE (1)
PE(36:3) (1)
PC(19:0/19:0) (1)
LPC(19:0) (1)

First Public Date

2023 (1)

Classification

bacteria (1)

Modification

Heavy form (1)
Heavy form - site K (1)
Medium form - site K (1)
Medium form - site N-term (1)

Release Date

2022 (2)
2019 (1)
2014 (1)

Lab affiliation

1) AGH University of Krakow, Krakow, Poland 2) Maj Institute of Pharmacology, Polish Academy od Sciences, Krakow, Poland (1)
Aalborg University Laboratory for Medical Massspectrometry (1)
Adelaide Proteomics Centre (1)
CSIRO Food Futures National Research Flagship, Division of Livestock Industries, Queensland Biosciences Precinct, St. Lucia, Queensland, Australia (1)
Center for Mass Spectrometry and Optical Spectroscopy (CeMOS), Mannheim University of Applied Sciences, Paul-Wittsack Str. 10, 68163 Mannheim, Germany (1)
Department of Life Sciences, University of Siena Via Aldo Moro 2, 53100 Siena, Italy (1)
Department of Molecular Medicine, Institute of Virology, Biomedical Research Center, Slovak Academy of Sciences (1)
Department of Psychiatry and Neurochemistry, Sahlgrenska Academy at the University of Gothenburg, SE-431 80 Mölndal, Sweden (1)
Director, Centre for inflammation, Centenary Institute (1)
Director, National Research Centre for Banana, Trichy, Tamil Nadu, India (1)
Division of Signal Transduction in Cancer and Metabolism, German Cancer Research Centre (DKFZ), Heidelberg, Germany (1)
Dr.S. UMA Director, National Research Centre for Banana Trichy, Tamil Nadu, India (1)
FDA (1)
Faculty of Biology, St. Petersburg State University (SPbSU), 199034, Universitetskaya em., 7/9, St. Petersburg, Russia (1)
Functional Proteomic Lab, Department of Life Sciences, University of Siena, Siena, Italy (1)
Functional Proteomics Lab, Department of Life Sciences, University of Siena, 53100 Siena, Italy (1)
Functional Proteomics Lab, Department of Life Sciences, University of Siena, Siena , 53100 Italy (1)
Functional Proteomics Lab, Dpt. Life Sciences, University of Siena, Italy (1)
Functional Proteomics Lab. Life Sciences Dept., University of Siena Siena, Italy (1)
Functional Proteomics Lab., Department of Life Sciences, University of Siena, 53100 Siena, Italy (1)
Functional Proteomics Lab., Dept Life Sciences, University of Siena (1)
Functional Proteomics Lab., Dept Life Sciences, University of Siena. (1)
Future Industries Institute The University of South Australia (1)
Future Industries Institute, The Univrsity of South Australia (1)
German Research Cancer Center (DKFZ), Heidelberg, Germany (1)
Hormones & Cancer Group, Kolling Institute, University of Sydney, Sydney 2065, Australia (1)
INRA Centre val de Loire 5tours, France) UMR INRA 85 CNRS 7247 UFR IFCE Physiologie de la reproduction et des comportements PAIB2 platform (1)
Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Center SAS (1)
Institute of Plant Genetics and Biotechnology, Slovak Academy of Sciences, Slovakia (1)
Instituto de Parasitología y Biomedicina "López - Neyra", CSIC Departamento de Biología Celular e Inmunología Parque Tecnológico de Ciencias de la Salud, Avda. del Conocimiento, s/n 18016, Granada-Spain (1)

Tags

pathogen (1)
pathogen:bacterium (1)

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Comprehensive mapping of the bull sperm surface proteome

Nitrogen cavitation of bovine sperm to isolate plasma membrane. FASP digestion using trypsin. Data acquired using 5 workflows: (1) Unfractionated on a 5600 TripleTOF; (2) SCX-ESI-LC-MS/MS on a QSTAR Elite; (3) 1D Gel-LC-ESI-LC-MS/MS on a QSTAR Elite; (4) SCX-LC-MALDI-MS/MS on a UltrafleXtreme; (5) ...

ORGANISM(S): Bos taurus (Bovine)

2020-01-27 | PXD000007 | Pride

Raw N-glycan MALDI mass spectrometry imaging data on formalin-fixed mouse kidney

The N-glycome was mapped and visualised on formalin-fixed mouse kidney tissue using an ultrafleXtreme MALDI-ToF/ToF MS instrument (Bruker Daltonics).

ORGANISM(S): Mus musculus (Mouse)

2018-11-02 | PXD009808 | Pride

Formalin-fixed Kidney N-glycan Mouse Maldi Mass spectrometry imaging

Egg White as a quality control in MALDI Mass Spectrometry Imaging

Tryptic peptides and N-glycans were spatially mapped and visualised on formalin-fixed paraffin-embedded (FFPE) endometrial cancer tissue microarrays (TMAs) using an ultrafleXtreme MALDI-ToF/ToF MS instrument (Bruker Daltonics). FFPE egg white was placed either side of each TMA and used as an externa...

ORGANISM(S): Gallus gallus (Chicken)

2019-12-11 | PXD014310 | Pride

Maldi Ffpe Imaging Egg white

Data in support of Enhanced amyloid beta proteoform detection in an Alzheimer’s disease model by integrated matrix composition enhanced MALDI Imaging and laser capture microdissection

This study has investigated several parameters to obtain increased detection of the amyloid plaque intact protein profile, including a comparison of commonly used MALDI matrices, acid based reduction of signal suppression as well as the combination of strong acid based protein aggregate extraction f...

ORGANISM(S): Mus musculus (Mouse)

2021-03-25 | PXD009353 | Pride

Imaging ms Maldi Alzheimers disease Biomarkers

Identification of multiple transferrin species in spleen from mice with collagen-induced arthritis which may reflect changes in transferrin glycosylation associated with the disease activity. Role of CD38. Set 2 of identified proteins (MALDI TOF/TOF UltrafleXtreme, Bruker).

Collagen type II-induced arthritis (CIA) is an autoimmune disease that is accompanied by a complex host systemic response, which includes inflammatory and autoimmune reactions. Since to develop CIA is required the injection of antigen in complete Freund’s adjuvant (CFA), which is a water-in-mineral-...

ORGANISM(S): Mus musculus (Mouse)

2015-12-10 | PXD002643 | Pride

Protein species Rheumatoid arthritis Proteoforms Cd38 Inflammation 2d-dige

Assessing the potential of sputtered gold nanolayers in mass spectrometry imaging for metabolomics applications (Brain MALDI-MSI assay)

Mass spectrometry imaging (MSI) is a molecular imaging technique that maps the distribution of molecules in biological tissues with high spatial resolution. The most widely used MSI modality is matrix-assisted laser desorption/ionization (MALDI), mainly due to the large variety of analyte classes...

2022-01-21 | MTBLS588 | MetaboLights

Effect of selenium and methods of protein extraction on the proteomic profile of Saccharomyces yeast.

Not available

S-EPMC9462545 | biostudies-literature

Assessing the potentiality of sputtered gold nanolayers in mass spectrometry imaging for metabolomics applications (Liver MALDI-MSI assay)

Mass spectrometry imaging (MSI) is a molecular imaging technique that maps the distribution of molecules in biological tissues with high spatial resolution. The most widely used MSI modality is matrix-assisted laser desorption/ionization (MALDI), but some organic matrices used in classical MALDI ...

2022-01-21 | MTBLS589 | MetaboLights

Optimization of plasma sample pretreatment for quantitative analysis using iTRAQ labeling and LC-MALDI-TOF/TOF.

Not available

S-EPMC4079693 | biostudies-literature

Viral Biomarker Detection and Validation Using MALDI Mass Spectrometry Imaging (MSI).

Not available

S-EPMC9506211 | biostudies-literature

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