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TranscriptomicsIdentification of Xenotropic MuLV-related virus
This series includes 20 microarrays used to identify Xenotropic MuLV-related virus (XMRV) in a set of human prostate tumors associated with R462Q RNASEL variant (Urisman, et al. 2006). The series includes 19 prostate tumor samples (VP) and a cell line control (HeLa).
ORGANISM(S): Viruses 
2010-07-01 | E-GEOD-3607 | biostudies-arrayexpress
ProteomicsAffinity purification MS of human Ubiquitin-tagged RIT1
Human RIT1 was tagged with HA tag + N or C terminal ubiquitin (HA-Ubiqutin-RIT1 and HA-RIT1-Ubiqutin) and compared with empty vector (EV) or S35N/M90I RIT1 mutant (HA-RIT1 S35N/M90I). The constructs were expressed in human 293T cells and affinity purified using HA beads. RIT1 interacting proteins we...
ORGANISM(S): Homo sapiens (Human) 
2024-07-09 | PXD047228 | Pride
Human Ubiquitin Rit1 
TranscriptomicsE-Predict Training Data Set and Examples
This series includes a 32-array training dataset used to evaluate E-Predict normalization and similarity metric parameters as well as 13 microarrays used as examples in (Urisman, et. al 2005). Training data set includes 15 independent HeLa RNAhybridizations (microarrays 1-15), 10 independent nasal l...
ORGANISM(S): Viruses 
2010-06-10 | E-GEOD-2228 | biostudies-arrayexpress
ProteomicsRIT1 oncoproteins escape LZTR1-mediated proteolysis
These data accompany our publication "RIT1 oncoproteins escape LZTR1-mediated proteolysis" (Castel P., et al. Science, 2019). Experiment 1: Identification of LZTR1 as an interacting partner of RIT1 Q Exactive Plus P20161208-02 FLAG GFP P20161208-03 FLAG RIT1 LTQ Orbitrap Velos ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-02-14 | MSV000083444 | MassIVE
UnknownE-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns.
Not available
S-EPMC1242213 | biostudies-literature
TranscriptomicsSARS coronavirus series
Set of microarray experiments used to identify an unknown coronavirus in a viral culture derived from a patient with SARS. March 2003. Keywords = SARS Keywords = coronavirus Keywords = viral discovery Keywords = viruses Keywords = respiratory infection
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-546 | biostudies-arrayexpress
TranscriptomicsPediatric RTIs
This series includes 278 microarrays used to detect respiratory viruses in a set of nasopharyngeal lavage specimens from children with respiratory tract infections Objective: To assess the utility of a pan-viral DNA microarray platform (Virochip) in the detection of viruses associated with pediatri...
ORGANISM(S): Viruses 
2010-05-26 | E-GEOD-10294 | biostudies-arrayexpress
Proteomics8 lung adenocarcinoma (NSCLC) cell lines - phosphoproteome discovery (CID) and BLIB spectral library
This dataset accompanies our manuscript "Targeted phosphoproteomics of the Ras signaling network reveal regulatory mechanisms mediated by oncogenic KRAS." 8 representative lung adenocarcinoma cell lines were included in this deep proteome/phosphoproteome discovery effort. This dataset represents Ti...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-02-04 | MSV000082018 | MassIVE
ProteomicsKinase peptide discovery in MIB enriched samples using 2m monolithic silica-C18 column
This dataset accompanies our publication "An optimized chromatographic strategy for multiplexing in parallel reaction monitoring mass spectrometry: Insights from quantitation of activated kinases" in Molecular & Cellular Proteomics, 2016 (https://www.ncbi.nlm.nih.gov/pubmed/27940637). The submitted ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-04-10 | MSV000079644 | MassIVE
TranscriptomicsGlobal response to chemotherapy-induced apoptosis
Here we use an integrated systems-level examination of transcription, translation, and proteolysis to explore how cancer cells struggle with a chemotherapeutic drug prior to succumbing to apoptosis. As a model system we study myeloma cells exposed to the proteasome inhibitor bortezomib, a first-line...
ORGANISM(S): Homo sapiens 
2013-10-17 | E-GEOD-48785 | biostudies-arrayexpress
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