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TranscriptomicsMolecular and physiological adaptations of Lactococcus lactis at near-zero growth rates
This paper describes the molecular and physiological adaptations of Lactococcus lactis during the transition from a growing to a near-zero growth state using carbon-limited retentostat cultivation. Metabolic and transcriptomic analyses revealed that metabolic patterns shifted between homolactic and ...
ORGANISM(S): Lactococcus lactis 
2014-01-01 | E-GEOD-51494 | biostudies-arrayexpress
TranscriptomicstagF1-F2 and dlt mutant study
Several strains of Lactobacillus plantarum are marketed as health-promoting probiotics. The role and interplay of specific cell-wall compounds like wall- and lipo-teichoic acids (WTA and LTA) in probiotic-host interactions remains obscure. Through genome mining and mutagenesis we constructed derivat...
ORGANISM(S): Lactobacillus plantarum 
2011-05-01 | E-GEOD-27683 | biostudies-arrayexpress
TranscriptomicsWT vs KO of lp_2991 comparison
A mutant of L. plantarumWCFS1 (deletion of lp_2991) was compared with the wildtype grown in standard MRS broth. Cells were sampled at OD1 for mRNA extraction. Knockout vs wildtype. Technical replicates (same mRNA isolation) used for a dye swap.
ORGANISM(S): Lactobacillus plantarum WCFS1 
2010-04-01 | E-GEOD-20515 | biostudies-arrayexpress
TranscriptomicsCharacterization of the the L. plantarum capsular polysaccharide clusters
The bacterial cell envelope is a complex, multilayered structure that is not only essential to maintain cellular integrity, but also facilitates vital bacterial processes such as adaption, colonization and adhesion. Cell envelopes comprise a wide range of molecules, such as proteins and capsular pol...
ORGANISM(S): Lactobacillus plantarum 
2011-12-23 | E-GEOD-34690 | biostudies-arrayexpress
TranscriptomicsThe impact of Lactobacillus plantarum sortase on target-protein sorting, gastrointestinal persistence and host immunomodulation
Sortases are transpeptidase enzymes that couple surface proteins to the peptidoglycan of Gram-positive bacteria. Several sortase-dependent proteins (SDPs) have been identified that are crucial for bacterial pathogenesis and, although less frequently, for the physiology of non-pathogenic bacteria. We...
ORGANISM(S): Lactobacillus plantarum 
2012-01-12 | E-GEOD-34999 | biostudies-arrayexpress
TranscriptomicsL. plantarum grown in a variety of different fermentation conditions
Lactobacillus plantarum WCFS1 was differentially fermented in 29 different fermentations according to a factorial, combinatorial scheme that included variations in growth temperature (28 or 37C), NaCl concentration (0 or 0.3M), pH (5.2, 5.8, 6.4), as well as oxygen (N2 or air) and amino acid availab...
ORGANISM(S): Lactobacillus plantarum 
2011-09-30 | E-GEOD-31076 | biostudies-arrayexpress
TranscriptomicsL. plantarum growth curve experiment sampled a different optical densities
Specific Lactobacillus strains are marketed as probiotics i.e. health promoting organisms. As previously shown in vivo, L. plantarum WCFS1 modulates immune responses via nuclear factor (NF)kB in a growth phase dependent manner, likely caused by changed microbial cell surface characteristics. Here, w...
ORGANISM(S): Lactobacillus plantarum WCFS1 
2012-01-01 | E-GEOD-31000 | biostudies-arrayexpress
ProteomicsTaestivum - Shoot, iBAQ (Vuetal,frontplantsci2017)
abundance based on iBAQ, Interaction consistency score: 24.5, Coverage: 14
ORGANISM(S): 4565 
2017-00-00 | 402959892 | PAXDB
ProteomicsTaestivum - Shoot, iBAQ (Vuetal,frontplantsci2017)
abundance based on iBAQ, Interaction consistency score: 22.9, Coverage: 14
ORGANISM(S): 4565 
2017-00-00 | 118632943 | PAXDB
ProteomicsTaestivum - Shoot, iBAQ (Vuetal,frontplantsci2017)
abundance based on iBAQ, Interaction consistency score: 25.2, Coverage: 14
ORGANISM(S): 4565 
2017-00-00 | 1222202851 | PAXDB
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