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ProteomicsMetaproteomes of the ciliated edge from the gill filaments of the deep-sea mussel “Bathymodiolus” childressi infected by Ca. Endonucleobacter
“Bathymodiolus” childressi is a species of deep-sea mussels found predominantly in the Gulf of Mexico harbouring a methane oxidizing symbiont (MOX). Ca. Endonucleobacter is a gammaproteobacterial intranuclear parasite that infects the ciliated edge cells of the deep-sea mussel “B.” childressi. After...
ORGANISM(S): Candidatus Endonucleobacter methanotrophic bacterial endosymbiont of Bathymodiolus childressi Bathymodiolus childressi 
2025-01-13 | PXD020317 | Pride
Endozoicomonas  intranuclear parasite  chromatin  t3ss  ipgd  lipid droplets  chitin  apoptosis inhibitors  laser capture microdissection  cytoskeleton disentanglement  lc-ms/ms  metaproteomics  metaproteome 
ProteomicsMeta-omics analysis of microbially induced carbonate precipitation at a CO2 rich geyser in Utah
Microbially induced carbonate precipitation (MICP) refers to the biogeochemical process in which calcium carbonate is precipitated by altering the local geochemical environment (Mortensen et al. 2011). These alterations occur as a by-product of common microbial metabolic activities by increasing the...
ORGANISM(S): Eukaryota (eucaryotes) Bacteria Archaea 
2024-11-18 | PXD041379 | Pride
Rhodobacterales  anoxygenic photosynthesis. Micp  biomineralization  crystal geyser  caco3  lc-ms/ms  metaproteomics  metagenomics  travertine formation  microbiome 
ProteomicsComparison of sample preservation methods for field collection of animal-microbe symbioses for metaproteomic analyses
When studying gene expression in microbe-animals symbioses collected in the field it is essential to quickly and efficiently preserve in situ symbiont and host gene expression patterns. One of the most commonly used sample preservation methods for samples targeted for proteomic analyses is flash fre...
ORGANISM(S): Olavius algarvensis Gamma 3 endosymbiont Chromatiales bacterium OalgGamma1 Olavius algarvensis sulfate-reducing endosymbiont Olavius algarvensis spirochete endosymbiont Olavius algarvensis Olavius algarvensis Delta 4 endosymbiont Olavius algarvensis Delta 1 endosymbiont Olavius algarvensis Gamma 1 endosymbiont Spirochaeta sp. ELBA 
2021-11-03 | PXD014591 | Pride
1d-lc Olavius algarvensis Metaproteome Gutless oligochaetes Microbiome Rnalater Chemosynthetic symbiosis Field samples Proteobacteria Sample preservation Thiotrophic endosymbionts Metaproteomics 
ProteomicsTesting long-term (up to 4 weeks) RNAlater preservation of field collected animal-microbe symbioses at room temperature for metaproteomic analyses
When studying gene expression in microbe-animals symbioses collected in the field it is essential to quickly and efficiently preserve in situ symbiont and host gene expression patterns. One of the most commonly used sample preservation methods for samples targeted for proteomic analyses is flash fre...
ORGANISM(S): Olavius algarvensis Gamma 3 endosymbiont Chromatiales bacterium OalgGamma1 Olavius algarvensis sulfate-reducing endosymbiont Olavius algarvensis spirochete endosymbiont Olavius algarvensis Olavius algarvensis Delta 1 endosymbiont Olavius algarvensis Delta 4 endosymbiont Olavius algarvensis Gamma 1 endosymbiont Spirochaeta sp. ELBA 
2021-11-03 | PXD014881 | Pride
1d-lc Olavius algarvensis Metaproteome Gutless oligochaetes Microbiome Rnalater Chemosynthetic symbiosis Field samples Proteobacteria Sample preservation Thiotrophic endosymbionts Metaproteomics 
ProteomicsRepetition of comparison of sample preservation methods for field collection of animal-microbe symbioses for metaproteomic analyses
When studying gene expression in microbe-animals symbioses collected in the field it is essential to quickly and efficiently preserve in situ symbiont and host protein abundance patterns. One of the most commonly used sample preservation methods for samples targeted for proteomic analyses is flash f...
ORGANISM(S): Olavius algarvensis sulfate-reducing endosymbiont Olavius algarvensis spirochete endosymbiont Olavius algarvensis Olavius algarvensis Delta 1 endosymbiont Olavius algarvensis Delta 4 endosymbiont Olavius algarvensis Gamma 1 endosymbiont 
2021-11-03 | PXD026631 | Pride
Microbiom 1d-lc Olavius algarvensis Metaproteome Gutless oligochaetes Rnalater Chemosynthetic symbiosis Field samples Proteobacteria Sample preservation Thiotrophic endosymbionts Metaproteomics 
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