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ProteomicsAlterations in Bacillus subtilis caused by high salinity and the compatible solute glycine betaine
Cells were grown aerobically at 37 degC in Spizizen minimal medium either supplemented with 1 mM glycine betaine, 1.2 M NaCl or 1.2 M NaCl and 1 mM glycine betaine. Cells were harvested in the exponential growth phase at an OD600nm of 1.0. Proteome analysis was performed with samples from three biol...
ORGANISM(S): Bacillus Subtilis (ncbitaxon:1423) 
2020-01-08 | MSV000084766 | MassIVE
ProteomicsImpact of different oral treatments on the composition of the supragingival plaque microbiome
Using a metaproteome approach in addition to a standard plaque-regrowth study, this study examined the impact of different concentrations of lactoperoxidase (LPO) in two lozenge formulations on early plaque formation, microbiome composition, and active biological processes in young orally healthy vo...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-06-29 | MSV000089755 | MassIVE
ProteomicsMetaproteomics Analysis of Microbial Diversity of Human Saliva and Tongue Dorsum in Young Healthy Individuals
dataset for metaproteomics analysis to characterize of the composition of salivary and tongue microbial communities within healthy subjects in the range of age between 20-30 years
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-07-26 | MSV000084137 | MassIVE
ProteomicsMini-Bacillus - Large-scale reduction of the Bacillus subtilis genome: Consequences for the transcriptional network, resource allocation, and metabolism
In this study, we have applied the top-down approach to reduce the genome of B. subtilis in order to obtain minimal strains with robust growth on complex medium at 37°C. For this purpose, we have evaluated the function of each gene of the B. subtilis genome and identified essential, important and di...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2016-12-06 | PXD004565 | Pride
Dia Bacillus subtilis Lc-ms/ms 
ProteomicsSigB modulates expression of novel SigB regulon members via Bc1009 in non-stressed and heat-stressed cells revealing its alternative roles in Bacillus cereus
Protein samples were measured using the LC-MS/MS platform containing reversed-phase nano liquid chromatography (nano Acquity M-class UPLC) (Waters Corporation, Massachusetts, USA), which was coupled to nanospray ionization tandem mass spectrometry with traveling wave ion mobility using high-definiti...
ORGANISM(S): Bacillus Cereus Atcc 14579 (ncbitaxon:226900) 
MSV000090315 | MassIVE
ProteomicsCytosolic proteome of Staphylococcus aureus HG001 post internalization in bronchial epithelial cells - S. aureus dataset
The data set consists of 32 S. aureus cytosolic samples that were collected by GFP supported cell sorting during infection in lung epithelial cells. The data include 8 time points (2.5 h, 6.5 h , 24 h, 48 h, 72 h, and 96 h post infection plus exponential and non-adherent control) that were collected...
ORGANISM(S): Staphylococcus Aureus Hg001 
MSV000082920 | MassIVE
ProteomicsCytosolic proteome of Staphylococcus aureus HG001 post internalization in bronchial epithelial cells - human dataset
The data set consists of 32 cytosolic samples of human bronchial epithelial cells that were collected during infection with S. aureus. The data include 8 (0h, 1h, 2.5 h, 6.5 h, 24 h, 48 h, 72 h, and 96 h post infection) time points that were collected out of four biological replicates. DIA data and ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000082923 | MassIVE
Proteomics,MultiomicsProteomic and Transcriptomic Changes in Hibernating Grizzly Bears Reveal Metabolic and Signaling Pathways that Protect against Muscle Atrophy
Muscle atrophy is a physiological response to disuse and malnutrition, but hibernating bears are largely resistant to this phenomenon. Unlike other mammals, they efficiently reabsorb amino acids from urine, periodically activate muscle contraction, and their adipocytes differentially responds to ins...
ORGANISM(S): Ursus Arctos Horribilis (ncbitaxon:116960) 
2020-01-06 | MSV000084760 | MassIVE
ProteomicsCross-sectional association of salivary proteins with age, sex, body mass index, smoking, and education
In a cross-sectional approach, we analyzed the influence of age, sex, body mass index (BMI), smoking, and education on salivary protein signatures in whole saliva samples of 187 individuals. Subjects were randomly selected from the population-based Study of Health in Pomerania (SHIP-Trend).
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-03-13 | MSV000083569 | MassIVE
ProteomicsClpXP, ClpCP and ClpEP proteases effects on the Streptococcus pneumoniae proteome
In the important human pathogen, Streptococcus pneumoniae, the ClpP protease is essential for modulating virulence and the cellular stress response. Here, the Clp ATPase chaperones associate with the ClpP protease to mediate general and targeted proteolysis. To identify the ClpP-dependent function o...
ORGANISM(S): Staphylococcus aureus 
2025-05-01 | PXD061622 | Pride
Clpx Protein homeostasis Pneumococcus Clpp Streptococcus pneumoniae Clpe Clpc 
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