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ProteomicsRheb and TRF1 PhastID mass spectrometric data
Rheb is a small G protein that functions as the direct activator of the mechanistic target of rapamycin complex 1 (mTORC1) to coordinate signaling cascades in response to nutrients and growth factors. Despite extensive studies, the guanine nucleotide exchange factor (GEF) that directly activates Rhe...
ORGANISM(S): Homo Sapiens 
PXD037078 |
TranscriptomicsComparison of transcriptome profile between wild-type and dao mutant plants
We identified and characterized that the rice Dioxygenase for Auxin Oxidation (dao) mutant displays pleiotropic phenotypes, including indehiscent anthers, sterile pollens, and increased free IAA levels in anthers.We conclude that DAO-mediated auxin catabolism is essential for auxin homeostasis and l...
ORGANISM(S): Oryza sativa Japonica Group 
2012-09-25 | E-GEOD-41097 | biostudies-arrayexpress
ProteomicsHERD-1 Flag IP mass data in C.elegans
Proteins that may interact with HERD-1 were identified with Flag IP-mass in animals, which were tagged with 3xflag::GFP before the stat condon of HERD-1 in C.elegans.
ORGANISM(S): Caenorhabditis elegans 
2024-07-14 | PXD051885 | Pride
Herd-1 Ip mass C.elegans 
ProteomicsA nuclear pore-anchored condensate enables germ granule organisation and transgenerational epigenetic inheritance
Biomolecular condensates, such as stress and germ granules, often contain sub-compartments. For instance, the Caenorhabditis elegans germ granule, which localizes near the outer nuclear membrane of germ cell nuclei, is composed of at least four ordered compartments, each housing distinct sets of pro...
ORGANISM(S): Caenorhabditis elegans 
2025-02-09 | PXD056752 | Pride
Transgenerational epigenetic inheritance Ddx-19 Condensates C.elegans 
ProteomicsIdentification of protein interaction partners of SET-25 in Caenorhabditis elegans embryos using FLAG-tagged immunoprecipitation combined with liquid chromatography-tandem mass spectrometry (LC-MSMS)
Histone H3K9 trimethylation (H3K9me3) plays a pivotal role in the establishment and maintenance of heterochromatin and is essential for facilitating epigenetic inheritance. H3K9me3 is often biasedly deposited and associated with repetitive sequence regions, although the underlying mechanism remains ...
ORGANISM(S): Caenorhabditis elegans 
2026-02-25 | PXD072579 | Pride
Embryo C.elegans Lc-msms 
GenomicsChIP-Seq data from Arabidopsis thaliana under dark and far-red light
FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE 1 (FAR1) are two transposase-derived transcription factors initially identified as the key components in phytochrome A signaling and recently shown to function in the circadian clock. However, whether FHY3 and FAR1 are in...
ORGANISM(S): Arabidopsis thaliana 
2011-08-02 | E-GEOD-30711 | biostudies-arrayexpress
MetabolomicsThe trans-omics landscape of COVID-19
The outbreak of coronavirus disease 2019 (COVID-19) is a global health emergency. Various omics results have been reported for COVID-19, but the molecular hallmarks of COVID-19, especially in those patients without comorbidities, have not been fully investigated. Here we collect blood samples from 2...
2021-10-06 | MTBLS2542 | MetaboLights
TranscriptomicsExpression data from Arabidopsis thaliana under dark and far-red light
FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and its homolog FAR-RED IMPAIRED RESPONSE 1 (FAR1) are two transposase-derived transcription factors initially identified as the key components in phytochrome A signaling and recently shown to function in the circadian clock. However, whether FHY3 and FAR1 are in...
ORGANISM(S): Arabidopsis thaliana 
2011-08-01 | E-GEOD-30712 | biostudies-arrayexpress
TranscriptomicsProfiling study of B cells from lymph nodes in miR-146a over-expression transgenic mice
B cells were isolated from wild type and miR-146a transgenic mice, and analyzed using microarray assay.WT1 and WT2 were samples repeats, so were TG1 and TG2 . Each probe ID of a mouse transcript was ranked by fold change from up to down-regulated comparing to WT control. Sylamer miRNA seed enrichmen...
ORGANISM(S): Mus musculus 
2012-08-07 | E-GEOD-39779 | biostudies-arrayexpress
TranscriptomicsGenome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples
DNase I hypersensitive sites (DHSs) provide important information on the presence of transcriptional regulatory elements and the state of chromatin in mammalian cells1, 2, 3. Conventional DNase sequencing (DNase-seq) for genome-wide DHSs profiling is limited by the requirement of millions of cells4,...
ORGANISM(S): Mus musculus 
2015-11-25 | E-GEOD-61844 | biostudies-arrayexpress
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