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Unknown (2485)
Transcriptomics (419)
Genomics (110)
Proteomics (69)
Metabolomics (29)
Multiomics (1)

Organisms

Homo sapiens (222)
Mus musculus (159)
Drosophila melanogaster (9)
Arabidopsis thaliana (9)
Rattus norvegicus (7)
Gallus gallus (5)
Saccharomyces cerevisiae (5)
Danio rerio (5)
Globodera pallida (4)
Caenorhabditis elegans (4)
Porphyromonas gingivalis (3)
Oryza sativa (3)
Bordetella pertussis (3)
Mucor circinelloides (3)
Salmo salar (3)
Mycolicibacterium smegmatis MC2 155 (3)
Canis lupus familiaris (3)
Candida albicans (3)
Sus scrofa (3)
Pan troglodytes (2)
Oryza sativa Indica Group (2)
Zea mays (2)
Mesocricetus auratus (2)
Solanum tuberosum (2)
Oncorhynchus mykiss (2)
Heterocephalus glaber (2)
Mycobacterium tuberculosis H37Rv (2)
Oryza sativa Japonica Group (2)
Triticum aestivum (2)
Escherichia coli str. K-12 substr. MG1655 (2)

Organisms

Mus musculus (2)
Homo sapiens (2)
gut metagenome (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (484)
pride (63)
EGA (34)
MetaboLights (28)
ENA (7)
MassIVE (5)
geo (4)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (14)
T cell (5)
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Liver (4)
Blood (4)
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Hippocampus (2)
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Embryonic stem cell (2)
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Breast cancer stem cell (1)
Aorta smooth muscle tissue (1)
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Endometrial microvascular endothelial cells (1)
Hyphal cell (1)
Astrocyte of the cerebral cortex (1)
Neuron of cerebral cortex (1)
Aorta (1)
Vitreous humor (1)
Retina (1)
Blood platelet (1)
Embryonic fibroblast cell line (1)
Skin (1)
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Early embryonic cell (1)
Plant cell (1)
Bone marrow (1)

Disease

Cardiovascular system disease (2)
Lung Cancer (1)
Follicular thyroid carcinoma (1)
Wilms tumour (1)
Amyotrophic lateral sclerosis type 6 (1)
Familial hypercholesterolemia (1)
Neurodevelopmental delay (1)
Gallbladder carcinoma (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Macular holes (1)
Hepatitis C (1)
Diabetes mellitus (1)
Proliferative diabetic retinopathy (1)
Neuroblastoma (1)
Cervix carcinoma (1)
Breast cancer (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (63)
Shotgun proteomics (39)
Mass spectrometry (24)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (6)
Bottom-up proteomics (6)
SWATH MS (4)
NMR spectroscopy (3)
Mass spectrometry assay (3)
SRM/MRM (3)
Gel-based experiment (3)
Data-independent acquisition (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (162)
Illumina NovaSeq X (41)
NextSeq 2000 (33)
NextSeq 500 (28)
NextSeq 550 (25)
Illumina HiSeq 4000 (25)
Illumina HiSeq 2000 (19)
Illumina HiSeq 2500 (16)
Illumina MiSeq (8)
N/A (6)
DNBSEQ-G400 (6)
None (5)
NA (5)
DNBSEQ-T7 (4)
Maxwell 16 LEV-plant RNA kit (3)
Illumina HiSeq X (3)
BGISEQ-500 (3)
DELL PRECISION 7500 (2)
Tru-cut biopsy needle (Marquee®, 16 G × 10 cm) (2)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Single cells were captured using the 10x Genomics Chromium Controller. (2)
Element AVITI (2)
. (2)
10X Genomics Chromium (2)
R (2)
DELL PRECISION T7500 (1)
DELL PRICISION T7500 (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
Nanodrop (1)
Centrifuge (4 °C); ice/cold block (1)

Publication Date

2026 (199)
2025 (177)
2022 (21)
2010 (21)
2024 (19)
2020 (19)
2023 (17)
2015 (17)
2014 (16)
2021 (14)
2013 (12)
2011 (9)
2008 (8)
2017 (6)
2016 (6)
2012 (6)
2007 (5)
2019 (4)
2018 (4)
2009 (3)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:16750 (8)
CHEBI:25017 (8)
CHEBI:16335 (8)
CHEBI:16704 (8)
CHEBI:16027 (8)
CHEBI:17596 (8)
CHEBI:6650 (7)
CHEBI:17750 (7)
CHEBI:27897 (7)
CHEBI:17126 (6)
CHEBI:16811 (6)
CHEBI:24898 (6)
CHEBI:17148 (6)
CHEBI:15741 (6)
CHEBI:28044 (6)
CHEBI:30769 (6)
CHEBI:72998 (5)
CHEBI:17172 (5)
CHEBI:18186 (5)
CHEBI:18257 (5)
CHEBI:16695 (5)
CHEBI:17802 (5)
CHEBI:27470 (5)
CHEBI:17748 (5)
CHEBI:15428 (5)
CHEBI:17015 (5)
CHEBI:30753 (5)
CHEBI:17568 (5)
CHEBI:17509 (5)
CHEBI:7916 (5)

Metabolite Name

Leucine (5)
Taurine (4)
Adenosine (4)
Phenylalanine (4)
Guanosine (4)
Tryptophan (4)
Inosine (4)
Quercetin (3)
D-Gal alpha 1->6D-Gal alpha 1->6D-Glucose (3)
Cellotriose (3)
Beta-D-Glucose (3)
Alpha-D-Glucose (3)
UDP-glucose (3)
PC(16:0/0:0) (3)
Undecylenic acid (3)
D-Galactose (3)
D-Fructose (3)
D-Glucose (3)
AMP (3)
Methionine (3)
Betaine (3)
Putrescine (3)
2-Methylbutyroylcarnitine (3)
Myo-Inositol (3)
Tyrosine (3)
Vitexin (3)
Raffinose (3)
Linoleic acid (3)
Isoleucine (3)
D-Mannose (3)

First Public Date

2022 (3)
2025 (2)
2021 (1)
2014 (1)

Modification

3x(2)H labeled N6-acetyl-L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (164)
Transcription profiling by array (65)
RNA-seq of coding RNA from single cells (55)
ChIP-seq (46)
RNA-seq of total RNA (43)
Methylation profiling by array (16)
DNA-seq (14)
CUT&RUN (14)
Methylation profiling by high throughput sequencing (9)
Comparative genomic hybridization by array (8)
ATAC-seq (6)
RIP-seq (5)
RNA-seq of non coding RNA (5)
ChIP-chip by tiling array (4)
Hi-C (4)
Single nucleus RNA sequencing (4)
Bisulfite-seq (3)
MicroRNA profiling by high throughput sequencing (2)
Ribo-seq (2)
RAN-seq of total RNA from single cells (1)
MNase-seq (1)
MeDIP-seq (1)
Animal - One-color microarray (1)
Human - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
Capture-C (1)
CLIP-seq (1)
Transcription profiling by RT-PCR (1)
4C (1)

Release Date

2025 (399)
2022 (303)
2023 (287)
2021 (257)
2026 (237)
2024 (235)
2020 (201)
2019 (151)
2018 (138)
2015 (135)
2016 (118)
2017 (105)
2014 (78)
2013 (67)
2011 (54)
2010 (45)
2012 (39)
2008 (32)
2009 (28)
2007 (16)
2005 (12)
2006 (9)
2001 (6)
2004 (4)
2003 (3)
2000 (3)
2002 (2)
1998 (2)
1997 (2)
1999 (1)

Lab affiliation

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (3)
University of Illinois Urbana-Champaign (2)
Insitute of molecular systems biology, ETH Zurich, Switzerland (1)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
1. Center for Molecular Medicine Cologne, University of Cologne, Robert-Koch-Str. 21, D- 50931 Cologne, Germany 2. Inst. for Neurophysiology, University of Cologne, Robert-Koch-Str. 39, D-50931 Cologne, Germany 3. CECAD; Cologne Cluster of Excellence in Cellular Stress Responses in Ageing-associated Diseases, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931 Cologne, Germany (1)
Mass Spectrometry and Proteomics Facility, Campus Chemistry Instrument Center, The Ohio State University, Columbus, Ohio, USA The Ohio State University Wexner Medical Center, Columbus, Ohio, USA (1)
Department of Quantitative Biomedicine, University of Zurich, Switzerland (1)
Institut für Medizinische Mikrobiologie und Hygiene Elfriede-Aulhorn-Str. 6 72076 Tübingen Germany (1)
Institute for Stroke and Dementia Research (ISD), University Hospital, Ludwig-Maximilian-University (LMU), Munich, Germany (1)
Department of Biology Institute of Molecular Systems Biology ETH Zurich Switzerland (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena (1)
Institute of Biochemistry and Molecular Biology, Medical School, RWTH Aachen University, 52074 Aachen, Germany (1)
1.Semmelweis University, Department of Pharmacology and Pharmacotherapy, Budapest, Hungary. 2.Pharmahungary Group, Szeged, Hungary (1)
University of Rouen Normandie, INSA Rouen Normandie, CNRS, Polymers, Biopolymers, Surfaces Laboratory UMR 6270, F-76000 Rouen, France (1)
Institute of Microbiology, University of Greifswald, Germany (1)
Cardiovascular Division, King's College London, London, UK (1)
Medical Research Council Protein Phosphorylation and Ubiquitylation Unit (MRC-PPU), School of Life Sciences, University of Dundee, Dundee, UK (1)
Laboratorio Core Facilities Gaslini Children's Hospital (1)
Freie Universität Berlin, Institute of Chemistry and Biochemistry, Core Facility BioSupraMol, Thielallee 63, D-14195, Berlin, Germany (1)
Ist. G. Gaslini - Core Facilities - Proteomica Clinica (1)
eilika@mol.biol.ethz.ch (1)
CNRS UMR7242, Biotechnology and Cell Signaling, 300 Bd Sébastien Brant, 67412 Illkirch Cedex, France University of Strasbourg (1)
Department of Pathology, School of Medicine, Pontificia Universidad Católica de Chile, Santiago, 8330024, Chile (1)
Ruhr-Universität Bochum Medizinisches Proteom-Center AG Clinical Proteomics Universitätsstraße 150 44801 Bochum (1)
Department of Molecular Systems Biology, Microbiome biology Group, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (1)
National Heart and Lung Institute, Faculty of Medicine, Imperial College London, UK (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
as before (1)
Biozentrum, University of Basel, CH-4056 Basel, Switzerland (1)

Tags

xref:PubMed:35477759 (2)
xref:PubMed:35635655 (1)
xref:PubMed:34670408 (1)

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Pro-tumorigenic effects of HLA-G in Renal Cell Carcinoma

Renal cell carcinoma (RCC) frequently exhibits high expression of the immunomodulatory molecule HLA-G, which promotes immune tolerance and tumor progression. To define the cell-intrinsic transcriptional programs driven specifically by HLA-G1 neo-expression, we generated RCC7/HLA-G1 cells by lentivir...

ORGANISM(S): Homo sapiens

2026-05-01 | E-MTAB-16395 | biostudies-arrayexpress

Bulk RNA-seq of murine G-MDSCs after co-culture with ILC2s and control G-MDSCs

This experiment aimed to characterize the transcriptional response of murine granulocytic myeloid-derived suppressor cells (G-MDSCs) upon interaction with group 2 innate lymphoid cells (ILC2s). G-MDSCs were isolated from the bone marrow of C57BL/6 mice, while ILC2s were induced in vivo by hydrodynam...

ORGANISM(S): Mus musculus

2026-10-01 | E-MTAB-16286 | biostudies-arrayexpress

Left ventricular myocardial transcriptomic profiling for target discovery in a rat model of pressure overload-induced heart failure

Left ventricular myocardial transcriptomic profiling was performed in rats subjected to transverse aortic constriction (TAC)-induced heart failure and sham-operated controls to investigate gene expression changes associated with pressure overload-induced cardiac remodeling. The dataset was used in s...

ORGANISM(S): Rattus norvegicus

2026-06-11 | E-MTAB-17114 | biostudies-arrayexpress

RNA-Seq of fibroblasts influenced by exosomes derived from melanoma cell line G-361

In this in-vitro study, we demonstrate the different effects of exosomes produced by melanoma cells on the functional properties of normal dermal fibroblasts and fibroblasts prepared from skin metastasis of CMM. Both normal and cancer-associated fibroblast were prepared by a)DMEM with 10% EDS (contr...

ORGANISM(S): Homo sapiens

2022-12-31 | E-MTAB-10278 | biostudies-arrayexpress

A novel somatic mutation in GNB2 provides new insights to the pathogenesis of Sturge-Weber syndrome.

Not available

S-EPMC8522634 | biostudies-literature

Absolute quantification of human milk caseins and the whey/casein ratio during the first year of lactation

Whey proteins and caseins in breast milk provide bioactivities and also have different amino acid composition. Accurate determination of these two major protein classes will therefore provide a better understanding of human milk composition and function and also aid in developing improved infant for...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-06-23 | MSV000081195 | MassIVE

Leveraging a Sturge-Weber Gene Discovery: An Agenda for Future Research.

Not available

S-EPMC5509161 | biostudies-literature

Rat Model of Parkes Weber Syndrome.

Not available

S-EPMC4517880 | biostudies-literature

Cathepsin G Controls Arterial But Not Venular Myeloid Cell Recruitment.

Not available

S-EPMC5288007 | biostudies-literature

Developmental expression of the Sturge-Weber syndrome-associated genetic mutation in Gnaq: a formal test of Happle's paradominant inheritance hypothesis.