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TranscriptomicsTranscription profiling of time series of Cyanothece sp. ATCC 51142 grown in 12 hour light/12 hour dark cycle
Cyanothece sp. ATCC 51142 12 hour light / 12 hour dark 48 hour time course
ORGANISM(S): Cyanothece sp. ATCC 51142 
2008-07-11 | E-TABM-337 | biostudies-arrayexpress
ProteomicsA Pilot Proteogenomic Study With Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma
We performed a pilot proteogenomic study to compare lung adenocarcinoma to lung squamous cell carcinoma using quantitative proteomics (6-plex TMT) combined with a customized Affymetrix GeneChip. Using MaxQuant software, we identified 51,001 unique peptides that mapped to 7,241 unique proteins and fr...
ORGANISM(S): Homo sapiens (Human) 
2015-11-06 | PXD002622 | Pride
Non-small cell lung cancer Lung adenocarcinoma Tmt Mct1 Nsclc Lung squamous cell carcinoma Glut1 Proteogenomics Slc16a1 Slc2a1 
ProteomicsSynechocystis.sp. 6803 - Whole organism, SC (Wegener,mcp,2010)
abundance based on Spectral counting, Interaction consistency score: 6.1, Coverage: 38
ORGANISM(S): 1148 
2010-00-00 | 1305834575 | PAXDB
ProteomicsTargeted Proteomics of Lung Squamous Cell Carcinomas
To address the complexity of cancer, liquid chromatography-multiple reaction monitoring mass spectrometry (LC-MRM) panels provide the capability to quantify clinical biomarkers and emerging protein markers to establish the context of tumor phenotypes that provide highly relevant supporting informati...
ORGANISM(S): Homo Sapiens 
PXD040680 | panorama
ProteomicsIntegrated proteomics-based physical and functional mapping of AXL kinase signaling pathways and inhibitors define its role in cell migration: BioID
To better understand the signaling complexity of AXL, a member of the TAM family of receptor tyrosine kinases, we created a physical and functional map of AXL signaling interactions, phosphorylation events, and target-engagement of three AXL tyrosine kinase inhibitors (TKI). We assessed AXL protein-...
ORGANISM(S): Homo sapiens (Human) 
2022-10-14 | PXD023911 | Pride
Lung cancer Targeted therapy Bioid Axl tyrosine kinase 
ProteomicsIntegrated proteomics-based physical and functional mapping of AXL kinase signaling pathways and inhibitors define its role in cell migration: ABPP
To better understand the signaling complexity of AXL, a member of the TAM family of receptor tyrosine kinases, we created a physical and functional map of AXL signaling interactions, phosphorylation events, and target-engagement of three AXL tyrosine kinase inhibitors (TKI). We assessed AXL protein-...
ORGANISM(S): Homo sapiens (Human) 
2022-10-14 | PXD023913 | Pride
Abpp Lung cancer Targeted therapy Axl tyrosine kinase 
ProteomicsIntegrated proteomics-based physical and functional mapping of AXL kinase signaling pathways and inhibitors define its role in cell migration: Phosphoproteomics
To better understand the signaling complexity of AXL, a member of the TAM family of receptor tyrosine kinases, we created a physical and functional map of AXL signaling interactions, phosphorylation events, and target-engagement of three AXL tyrosine kinase inhibitors (TKI). We assessed AXL protein-...
ORGANISM(S): Homo sapiens (Human) 
2022-10-14 | PXD023923 | Pride
Phosphoproteomics Lung cancer Targeted therapy Axl tyrosine kinase 
ProteomicsProteogenomic Landscape of Squamous Cell Lung Cancer 1: Digestion QC with DIA LC-MS/MS
We report an integrated analysis incorporating DNA copy number analyses, somatic exon mutations, mRNA expression via RNA-sequencing, and shotgun mass spectrometry analysis of protein abundance in 108 surgically resected squamous cell lung cancers (SCC) with accompanying clinical outcome, evaluation ...
ORGANISM(S): Homo sapiens (Human) 
2019-05-24 | PXD010357 | Pride
Human Dia Squamous cell carcinoma Lung cancer 
ProteomicsProteogenomic Landscape of Squamous Cell Lung Cancer 2: Tandem Mass Tag Datasets
We report an integrated analysis incorporating DNA copy number analyses, somatic exon mutations, mRNA expression via RNA-sequencing, and shotgun mass spectrometry analysis of protein abundance in 108 surgically resected squamous cell lung cancers (SCC) with accompanying clinical outcome, evaluation ...
ORGANISM(S): Homo sapiens (Human) 
2019-05-24 | PXD010429 | Pride
Human Tmt Squamous cell carcinoma Lung cancer 
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