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TranscriptomicsRNA-seq of hvsnac1.e (E) and Sebastian parent variety (S) during control (C) and drought stress (D)
Drought stress can damage crop growth and lead to a decline in yield, thereby affecting food security, especially in regions vulnerable to climate change. SNAC1 (Stress-responsive NAC1), the NAC transcription factor family member, plays a crucial role in stomatal movement regulation. Effective regul...
ORGANISM(S): Hordeum vulgare subsp. vulgare 
2025-02-12 | E-MTAB-14769 | biostudies-arrayexpress
TranscriptomicsRNA-seq data of barley embryos of wild-type ‘Sebastian’ and double mutant hvcbp20.ab/hvcbp80.b under control conditions and in the presence of 75 µM ABA
The spatial transcriptomic analysis of barley embryos in response to 75 µM ABA was investigated using Visium Spatial Transcriptomics (10×Genomics) technology. Embryo sections were collected from wild-type 'Sebastian' and a double mutant hvcbp20.ab/hvcbp80.b impaired in both subunits of the Cap-Bindi...
ORGANISM(S): Hordeum vulgare subsp. vulgare 
2025-07-31 | E-MTAB-14835 | biostudies-arrayexpress
TranscriptomicsRNA-seq of hvsnac1.d (D) during control (C) and drought stress (D)
Drought stress can damage crop growth and lead to a decline in yield, thereby affecting food security, especially in regions vulnerable to climate change. SNAC1 (Stress-responsive NAC1), the NAC transcription factor family member, plays a crucial role in stomatal movement regulation. Effective regul...
ORGANISM(S): Hordeum vulgare subsp. vulgare 
2025-02-12 | E-MTAB-14768 | biostudies-arrayexpress
TranscriptomicsGene regulation by the RcsCB two-component system and the auxiliary protein TviA in S. Typhi
In response to osmolarity, Salmonella enterica serotype Typhi (S. Typhi) regulates genes required for Vi capsular antigen expression oppositely to those required for motility and invasion. Previous studies suggest that osmoregulation of motility, invasion and capsule expression is mediated through t...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhi 
2010-05-18 | E-GEOD-15752 | biostudies-arrayexpress
TranscriptomicsDifferential gene expression analysis in adult rotation-resistant (RR) and wild-type (WT) western corn rootworm digestive tracts
The western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte) is an important pest of corn (Zea mays) in the US. Annual crop rotation between corn and soybean (Glycine max) disrupts the corn-dependent WCR lifecycle and was widely adopted to manage WCR. However, this strategy selected for ...
ORGANISM(S): Diabrotica virgifera virgifera 
2015-11-23 | E-GEOD-62480 | biostudies-arrayexpress
TranscriptomicsHvABI5 is involved in ABA-dependent drought response in barley
ABA INSENSITIVE 5 (ABI5) is a basic leucine zipper (bZIP) transcription factor which acts in the abscisic acid (ABA) signaling and is activated in response to abiotic stresses. It was shown that ABI5 binds ABA RESPONSIVE ELEMENTs (ABRE cis-elements) present in the promoters of regulated genes and ac...
ORGANISM(S): Hordeum vulgare subsp. vulgare 
2020-07-22 | E-MTAB-9072 | biostudies-arrayexpress
TranscriptomicsSmall RNA SBS signatures identified from maize using Illumina's SBS technology
Most endogenous siRNAs in Arabidopsis are dependent on RNA-DEPENDENT RNA POLYMERASE 2 (RDR2) for their biogenesis. Recent work has demonstrated that the maize MEDIATOR OF PARAMUTATION1 (mop1) gene is a predicted ortholog of the Arabidopsis RDR2 gene. The mop1 gene is required for establishment of pa...
ORGANISM(S): Zea mays 
2008-09-30 | E-GEOD-12173 | biostudies-arrayexpress
TranscriptomicsHuman transcriptome comparison in response to Staphylococcus aureus exposure
Biological replicates of THP1 cells incubated with live wild type S. aureus, THP1 cells incubated with dead wild type S. aureus and THP1 cells incubated with saeS- S. aureus were collected and their RNA were isolated via the Qiagen RNA Isolation Kit. The RNA were treated with RNAse free DNase and el...
ORGANISM(S): Homo sapiens 
2014-05-12 | E-ERAD-242 | biostudies-arrayexpress
TranscriptomicsTETs controls maintenance DNA methylation via the regulation of Dppa3
Dissection of catalytic and non-catalytic functions of Tet1 and Tet2. Transcriptome profiling of wild type, Tet1 catalytic mutants, Tet2 and Tet1/2 catalytic mutant catalytic during EpiLC differentiation.
ORGANISM(S): Mus musculus 
2020-10-05 | E-MTAB-6797 | biostudies-arrayexpress
ProteomicsIntegrative proteogenomics for differential expression and splicing variation in a DM1 mouse model
Here, we performed a large-scale coordinated transcriptomic and proteomic analysis to characterize a DM1 mouse model (HSALR) in comparison to wild-type. Our integrative proteogenomics approach comprised gene- and splicing-level assessments for mRNA and protein. It recapitulated many known instances ...
ORGANISM(S): Mus musculus (Mouse) 
2024-01-26 | PXD025589 | Pride
Mouse model Proteogenomics Transcriptomics Alternative splicing Proteomics Myotonic dystrophy type 1 (dm1) 
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