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TranscriptomicsRNA sequencing reveals diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.
We report the application of paired-end RNA sequencing for high throughput profiling of the Xenopus transcriptome in 23 distinct developmental stages. In total, we obtained over 900 million reads and the deep coverage allowed us to examine the transcriptome in detail. First, we found that ~150 genes...
ORGANISM(S): Xenopus (Silurana) tropicalis 
2012-05-03 | E-GEOD-37452 | biostudies-arrayexpress
UnknownArterial Blood, Rather Than Venous Blood, is a Better Source for Circulating Melanoma Cells.
Not available
S-EPMC4740300 | biostudies-literature
TranscriptomicsWhite Matter transcriptome in chronic alcoholism
Chronic alcohol consumption can lead to alchohol-related brain damage (ARBD). Despite the well known acute effects of alcohol the mechanism responsible for chronic brain damage is largely unknown. Pathologically the major change is the loss of white matter while neuronal loss is mild and restricted ...
ORGANISM(S): Homo sapiens 
2014-01-04 | E-GEOD-53808 | biostudies-arrayexpress
TranscriptomicsThe ets transcription factor ELF5 suppresses the estrogen sensitive phenotype and contributes to antiestrogen resistance in luminal breast cancer. [mouse]
The ets transcription factor ELF5 specifies the differentiation of mammary progenitor cells to establish the milk-secreting lineage. ER- and poor prognosis basal breast cancers arise from this progenitor cell and these cancers express high levels of Elf5. Knockdown of ELF5 expression in basal breast...
ORGANISM(S): Mus musculus 
2014-01-13 | E-GEOD-30406 | biostudies-arrayexpress
ProteomicsBirA*-RAB18 proximity biotinylation in HeLa cells
Proximity labelling using transient expression of the same exogenous BirA*-RAB18 construct in wild-type HeLa cells and in otherwise isogenic RAB3GAP1-, RAB3GAP2- and TRAPPC9-null HeLa cell lines.
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD016336 | Pride
Human Bira Hela Bioid 
ProteomicsLFQP of lysates from wild-type and TBC1D20-null HeLa cells
These data are from two wild-type HeLa clones (WT1, WT2) and two TBC1D20-null clones (5H2, 7H5), each analysed in triplicate.
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD016233 | Pride
Human Hela Rab18 Tbc1d20 Lfqp. 
ProteomicsLFQP of lysates from wild-type, RAB18-, TBC1D20-, RAB3GAP1- and RAB3GAP2-null RPE1 cells
These data are from two wild-type RPE1 clones (WT11, WT20), a RAB18-null clone, a TBC1D20-null clone, a RAB3GAP1-null clone and a RAB3GAP2-null clone, each analysed in triplicate.
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD016326 | Pride
Human Rpe1 Rab18 Rab3gap1 Tbc1d20 Lfqp Rab3gap2 
ProteomicsBioID2(Gly40Ser)-SEC22A proximity biotinylation in HeLa cells
Proximity labelling using transient expression of the same exogenous BioID2(Gly40Ser)-SEC22A construct in wild-type HeLa cells and in otherwise isogenic RAB3GAP1-, RAB3GAP2- and RAB18-null HeLa cell lines.
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD016404 | Pride
Human Rab3gap2 Sec22a Hela Rab18 Rab3gap1 Bioid Bioid2 
TranscriptomicsA Myc transcriptional program that is independent of EMT drives a poor prognosis tumor-propagating phenotype in HER2+ breast cancer
The HER2 (ERBB2) and MYC genes are commonly amplified genes in breast cancer, yet little is known about their molecular and clinical interaction. Using a novel chimeric mammary transgenic approach and in vitro models, we demonstrate markedly increased self renewal and tumour propagating capability o...
ORGANISM(S): Homo sapiens 
2013-09-24 | E-GEOD-43730 | biostudies-arrayexpress
TranscriptomicsThe ets transcription factor ELF5 suppresses the estrogen sensitive phenotype and contributes to antiestrogen resistance in luminal breast cancer.
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Homo sapiens 
2012-12-27 | E-GEOD-30407 | biostudies-arrayexpress
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