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Unknown (11854)
Proteomics (387)
Transcriptomics (296)
Genomics (88)
Metabolomics (80)
Other (4)

Organisms

Homo sapiens (346)
Mus musculus (207)
Arabidopsis thaliana (19)
Rattus norvegicus (11)
Oryza sativa (9)
Drosophila melanogaster (8)
Escherichia coli (6)
Saccharomyces cerevisiae (6)
synthetic construct (5)
Zea mays (4)
Macaca mulatta (3)
Ovis aries (3)
Oryza sativa Japonica Group (3)
Pinctada fucata (2)
Volvariella volvacea (2)
Bemisia tabaci (2)
Oryza sativa Indica Group (2)
Solanum tuberosum (2)
Bos taurus (2)
Sus scrofa (2)
Larimichthys crocea (2)
Tremella fuciformis (1)
Epinephelus coioides (1)
Shewanella loihica PV-4 (1)
Plutella xylostella (1)
Rhodococcus opacus (1)
Beauveria bassiana (1)
Oryza rufipogon (1)
Vitis labrusca x Vitis vinifera (1)
Taenia multiceps (1)

Organisms

Mus musculus (2)
Paracidovorax avenae RS-1 (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (341)
pride (264)
iProX (89)
MetaboLights (79)
EGA (37)
MassIVE (20)
PeptideAtlas (7)
ENA (7)
geo (4)
jPOST (4)
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GPMDB (1)
PAXDB (1)

Tissue

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Disease

Disease free (10)
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Alzheimer's disease (3)
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Brain glioblastoma multiforme (2)
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VSV infection (1)
Not Available (1)
Acute kidney failure (1)
Amyotrophic lateral sclerosis (1)
Antenatal onset (1)
Brain ischemia (1)
Carcinoma (1)
Cerebrovascular disease (1)
Cervix carcinoma (1)
Esophageal carcinoma (1)
Esophageal disease (1)
Esophagus adenocarcinoma (1)
Gastric adenocarcinoma (1)
Head and neck squamous cell carcinoma (1)
Hydronephrosis (1)

Technology Type

Mass Spectrometry (264)
Shotgun proteomics (127)
Mass spectrometry (62)
Bottom-up proteomics (48)
Data-dependent acquisition (29)
Affinity purification coupled with mass spectrometry proteomics (26)
Gel-based experiment (19)
Mass spectrometry assay (17)
Data-independent acquisition (17)
Top-down proteomics (15)
SRM/MRM (3)
SWATH MS (3)
Affinity proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Proteogenomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
DiaPASEF (1)
MSE (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (32)
Liquid Chromatography MS - positive - reverse phase (31)
Illumina HiSeq 2000 (8)
Q Exactive (6)
Illumina HiSeq 2500 (5)
Illumina NovaSeq 6000 (4)
Orbitrap Fusion Lumos (4)
Q Exactive Plus (4)
Orbitrap Exploris 480 (3)
BD FACSAria™ III (1)
10X Genomics Chromium Single Cell Kit (1)
10X genomics Chromium X (1)
BD FACSAriaII cell sorter (1)
Agilent 2100 bioanalyzer (1)
NanoDrop ND-1000 (1)
Affymetrix Genechip Command Console software (1)
Trizol Reagent (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
HiSeq X Ten (1)
NextSeq 500 (1)
MicrOTOF-Q II (1)
Instrument (1)
6520B Q-TOF LC/MS (1)
Orbitrap Exploris 240 (1)
Q Exactive HF (1)
TimsTOF (1)
TimsTOF SCP (1)
TripleTOF 5600 (1)
ZenoTOF 7600 (1)

Publication Date

2025 (84)
2024 (79)
2014 (70)
2022 (69)
2023 (63)
2012 (51)
2026 (47)
2013 (47)
2015 (40)
2021 (37)
2016 (34)
2010 (32)
2011 (29)
2019 (28)
2009 (28)
2020 (23)
2017 (19)
2018 (12)
2008 (11)
2007 (4)
2006 (1)
2003 (1)

UNIPROT ID/AC

2A5D_YEAST (1)
2AAA_YEAST (1)
3HAO_YEAST (1)
4932.YDL191W (1)
4932.YDR025W (1)
4932.YEL054C (1)
4932.YER102W (1)
4932.YER117W (1)
4932.YER137C-A (1)
4932.YER159C-A (1)
4932.YGR161C-C (1)
4932.YGR161W-A (1)
4932.YGR161W-B (1)
4932.YIL018W (1)
4932.YIL069C (1)
4932.YJR145C (1)
4932.YKR059W (1)
4932.YKR094C (1)
4932.YLR035C-A (1)
4932.YLR157C-A (1)
4932.YLR227W-A (1)
4932.YML026C (1)
4932.YML040W (1)
4932.YMR051C (1)
4932.YOL120C (1)
4932.YOR133W (1)
4932.YOR182C (1)
4932.YOR312C (1)
4932.YPL220W (1)
4932.YPL257W-A (1)

CHEBI ID

CHEBI:16704 (23)
CHEBI:17368 (23)
CHEBI:30769 (23)
CHEBI:16750 (22)
CHEBI:17568 (22)
CHEBI:17895 (22)
CHEBI:17154 (21)
CHEBI:17596 (20)
CHEBI:48131 (20)
CHEBI:16015 (19)
CHEBI:16040 (19)
CHEBI:16235 (19)
CHEBI:16708 (19)
CHEBI:17295 (19)
CHEBI:15971 (18)
CHEBI:16411 (18)
CHEBI:17509 (18)
CHEBI:55328 (18)
CHEBI:15354 (17)
CHEBI:15756 (17)
CHEBI:16467 (17)
CHEBI:16737 (17)
CHEBI:17203 (17)
CHEBI:18089 (17)
CHEBI:30805 (17)
CHEBI:15891 (16)
CHEBI:16335 (16)
CHEBI:16359 (16)
CHEBI:16919 (16)
CHEBI:17351 (16)

Metabolite Name

Inosine (20)
Guanosine (19)
Hypoxanthine (19)
Guanine (18)
Uridine (17)
Azelaic acid (16)
Adenine (15)
Taurine (15)
Uracil (15)
L-Phenylalanine (14)
L-Tyrosine (14)
Xanthosine (14)
Adenosine (13)
Choline (13)
Citric acid (13)
Creatine (13)
L-Arginine (13)
L-Tryptophan (13)
Suberic acid (13)
Uric acid (13)
Cytidine (12)
L-Serine (12)
Pantothenic acid (12)
Porphobilinogen (12)
Thymidine (12)
Glycerophosphocholine (11)
Indole (11)
L-Glutamine (11)
L-Proline (11)
Riboflavin (11)

First Public Date

2020 (4)
2022 (1)
2014 (1)
2013 (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
6x(2)H labeled dimethylated L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (172)
RNA-seq of coding RNA (58)
ChIP-seq (28)
Methylation profiling by high throughput sequencing (15)
RNA-seq of non coding RNA (15)
ChIP-chip by tiling array (11)
MicroRNA profiling by array (8)
Genotyping by array (6)
Comparative genomic hybridization by array (6)
Unknown experiment type (4)
Methylation profiling by array (3)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
Other (2)
Proteomic profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (1836)
2022 (1622)
2023 (1457)
2024 (1397)
2021 (1271)
2020 (934)
2019 (657)
2018 (528)
2017 (478)
2016 (396)
2015 (333)
2014 (302)
2026 (259)
2013 (175)
2012 (151)
2011 (113)
2010 (102)
2009 (83)
2008 (41)
2007 (17)
2006 (11)
2005 (11)
2004 (9)
2001 (5)
2003 (2)
2002 (2)
1997 (2)
2000 (1)

Lab affiliation

Third Military Medical University (5)
Tsinghua University, China (4)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Memorial Sloan Kettering Cancer Center (3)
Zhejiang University (3)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (2)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (2)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
Key Laboratory for Experimental Teratology of the Ministry of Education, Advanced Medical Research Institute, Qilu Hospital, Cheeloo College of Medicine, Shandong University (2)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
Shanghai Jiao Tong University (2)
South China Agricultural University (2)
Southwest University (2)
St Jude Children's Research Hospital (2)
St. Jude Children's Research Hospital (2)
State Key Laboratory for Development and Utilization of Forest Food Resources, Co-Innovation Center for Sustainable Forestry in Southern China, State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, College of Life Sciences, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China (2)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Tianjin Medical University General Hospital (2)
westlake.edu.cn (2)
, Dana-Farber Cancer Institute, Harvard Medical School 360 Longwood Avenue Longwood Center, LC4117 Boston, MA 02215 (1)
1 Department of Clinical Nutrition, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China 2 Clinical Research Center, Shanghai Children's Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127, China (1)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1.Centre for Genomics and Oncological Research (GENYO), Avenida de la Ilustración 114, 18016, Granada, Spain. 2.Department of Biochemistry and Molecular Biology II, Faculty of Pharmacy, University of Granada, Granada, Spain. 3.Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1.College of Veterinary Medicine, College of Animal Science, Jilin University, Changchun, 130062, China. 2. Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, 130122, China. (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)

Tags

xref:PubMed:35120625 (1)
xref:PubMed:17913887 (1)
xref:PubMed:32579944 (1)
xref:PubMed:25027476 (1)

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B lymphoma from TRAF3-deficient mice

Spleen samples with B lymphoma from TRAF3 knockout mice compared with littermate controls 3 lymphoma samples, 4 control samples

ORGANISM(S): Mus musculus

2014-09-11 | E-GEOD-48818 | biostudies-arrayexpress

PRDM15 is a master regulator of metabolism essential to sustain B-cell lymphomagenesis

PRDM family members are sequence-specific transcriptional regulators involved in cell identity and fate determination and are often dysregulated in cancer. The PRDM15 gene is of particular interest, given its relatively low expression in adult tissues and its overexpression in follicular lymphomas (...

2025-06-16 | MTBLS1639 | MetaboLights

Huh-7 exosomes and HBV

Hepatitis B virus (HBV) infection could cause hepatitis, liver cirrhosis and hepatocellular carcinoma. HBV-mediated pathogenesis is only partially understood, but X protein (HBx) reportedly possesses oncogenic potential. Exosomes are small membrane vesicles with diverse functions released by various...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080794 | MassIVE

Targeting G1–S Checkpoint–Compromised Cancers with Cyclin A/B RxL Inhibitors

Cancer cell proliferation requires precise control of E2F1 activity; excess activity promotes apoptosis. Here, we developed cell-permeable and bioavailable macrocycles that selectively kill small cell lung cancer (SCLC) cells with inherent high E2F1 activity by blocking RxL-mediated interactions of ...

ORGANISM(S): Homo sapiens (Human)

2025-05-30 | PXD055112 | Pride

Macrocycle Cyclin a E2f Cyclin b Cy/rxl motif Cdk2 Sac Synthetic lethality

TGF-b signaling and response

This work evaluates new and specific therapeutic targets and molecular diagnostic markers connected to the TGF-b response system in chronic fibrotic diseases.

ORGANISM(S): Mus musculus

2010-06-09 | E-GEOD-579 | biostudies-arrayexpress

Huh-7 exosomes and HBV - Quantitative Proteomic Analysis of Exosome Protein Content Changes Induced by Hepatitis B Virus in Huh-7 Cells Using SILAC Labeling and LC-MS/MS

ORGANISM(S): Homo sapiens (Human)

2014-10-09 | PXD001339 | Pride

Hbx Exosome Hepatitis b virus

Proteomic and transcriptomic responses to thiamethoxam in the Sweetpotato whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae)

We investigated the transcriptional response to thiamethoxam in the Bemisia tabaci using Illumina sequencing technology. A total of 1,338 genes were differently expressed in the thiamethoxam-resistant whiteflies. All the B biotype whiteflies were maintained on cabbage. The susceptible strain (TH-S)...

ORGANISM(S): Bemisia tabaci

2013-07-15 | E-GEOD-42102 | biostudies-arrayexpress

Role of microRNAs and microRNA machinery in the pathogenesis of Diffuse large B-cell Lymphomas

We performed miRNA expression profiling in a series of de novo DLBCLs, transformed DLBCLs and non-neoplastic lymph nodes using a microarray approach. Significant differentially expressed miRNAs among groups were identified using SAM analysis. Agilent microarray platform containing 470 miRNAs was us...

ORGANISM(S): Homo sapiens

2014-01-27 | E-GEOD-42906 | biostudies-arrayexpress

Elevated Choline Kinase α-Mediated Choline Metabolism Supports the Prolonged Survival of TRAF3-Deficient B Lymphocytes.

Not available

S-EPMC6946882 | biostudies-literature

IFIT1 polymorphisms predict interferon-α treatment efficiency for hepatitis B virus infection.

Not available

S-EPMC5124986 | biostudies-literature

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