Xie Rui R - OmicsDI

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Unknown (37)
Proteomics (25)
Metabolomics (4)
Transcriptomics (2)
Genomics (1)

Organisms

Homo sapiens (14)
Mus musculus (9)
Ovis aries (1)
Arabidopsis thaliana (1)
Escherichia coli (1)
Polygonatum cyrtonema (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Drosophila melanogaster (1)
Oryza sativa (1)
Staphylococcus aureus (1)

Repository

iProX (22)
MetaboLights (3)
pride (3)
biostudies-arrayexpress (2)
EGA (1)
GNPS (1)

Tissue

Leaf (1)
Plant cell (1)
Whole body (1)

Technology Type

Mass Spectrometry (3)
Mass spectrometry assay (2)
Shotgun proteomics (2)
Mass spectrometry (1)
MSE (1)

Instrument Platform

MicrOTOF-Q II (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2024 (12)
2025 (6)
2023 (5)
2020 (3)
2014 (1)
2013 (1)
2021 (1)
2026 (1)
2022 (1)

CHEBI ID

CHEBI:10025 (1)
CHEBI:10026 (1)
CHEBI:10072 (1)
CHEBI:10339 (1)
CHEBI:105327 (1)
CHEBI:107667 (1)
CHEBI:10782 (1)
CHEBI:1098 (1)
CHEBI:110187 (1)
CHEBI:113528 (1)
CHEBI:113532 (1)
CHEBI:116314 (1)
CHEBI:125610 (1)
CHEBI:133206 (1)
CHEBI:133221 (1)
CHEBI:133395 (1)
CHEBI:134470 (1)
CHEBI:136270 (1)
CHEBI:136292 (1)
CHEBI:137056 (1)
CHEBI:137286 (1)
CHEBI:13769 (1)
CHEBI:137759 (1)
CHEBI:137793 (1)
CHEBI:137889 (1)
CHEBI:138364 (1)
CHEBI:138389 (1)
CHEBI:138421 (1)
CHEBI:138761 (1)
CHEBI:138762 (1)

Metabolite Name

(+/-)-3-Hydroxynonanoic acid (1)
(+/-)-4-Methylene-2-pyrrolidinecarboxylic acid (1)
(+/-)-Sphaerosin (1)
(+/-)12,13-DiHOME (1)
(+/-)20-HDoHE (1)
(+/-)9-HpODE (1)
(-)-Carvomenthone (1)
(1E,4Z,6a,8b,10a)-8-(2-Methylbutanoyloxy)-10,15-dihydroxy-3-oxo-1,4,11(13)-germacratrien-12,6-olide (1)
(23S)-23,25-dihdroxy-24-oxovitamine D3 23-(beta-glucuronide) (1)
(23S,24S)-17,23-Epoxy-24,29-dihydroxy-27-norlanost-8-ene-3,15-dione (1)
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) (1)
(2R)-2-acetamido-3-(1H-indol-3-yl)propanoic acid (1)
(3S,5R,6R,6'S)-6,7-Didehydro-5,6-dihydro-3,5,6'-trihydroxy-13,14,20-trinor-3'-oxo-beta,epsilon-caroten-19',11'-olide 3-acetate (1)
(3b,16a,20R)-3,16,20,22,25-Pentahydroxy-5-cucurbiten-11-one 3-[glucosyl-(1->6)-glucoside] (1)
(3beta,17alpha,23R)-17,23-Epoxy-3,29-dihydroxy-27-norlanost-8-ene-15,24-dione (1)
(3beta,17alpha,23S)-17,23-Epoxy-3,29-dihydroxy-27-norlanost-8-en-24-one (1)
(3beta,17alpha,23S,24S)-17,23-Epoxy-3,24,29-trihydroxy-27-norlanost-8-en-15-one (1)
(3beta,22E,24R)-3-Hydroxyergosta-5,8,22-trien-7-one (1)
(3beta,22E,24R)-Ergosta-4,6,8(14),22-tetraen-3-ol (1)
(3beta,5alpha,6beta,9alpha,22E,24R)-23-Methylergosta-7,22-diene-3,5,6,9-tetrol (1)
(3beta,5alpha,9alpha,22E,24R)-5,9-Epidioxy-3-hydroxyergosta-7,22-dien-6-one (1)
(4-Hydroxybenzoyl)choline (1)
(4-{[2-methoxy-4-(prop-2-en-1-yl)phenoxy]carbonyl}phenyl)oxidanesulfonic acid (1)
(4E,7E,10Z,13E,16E,19E)-docosa-4,7,10,13,16,19-hexaenoic acid (1)
(4S,8R)-8,9-Dihydroxy-p-menth-1(6)-en-2-one (1)
(5,7-dihydroxy-4-oxo-2-phenyl-3,4-dihydro-2H-1-benzopyran-3-yl)oxidanesulfonic acid (1)
(6S)-6-beta-hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide (1)
(8alpha,10beta,11beta)-3-Hydroxy-4,15-dinor-1(5)-xanthen-12,8-olide (1)
(R)-1-O-b-D-glucopyranosyl-1,3-octanediol (1)
(S)-3-Hydroxyisobutyric acid (1)

Study type

Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2025 (8)
2022 (6)
2016 (4)
2024 (3)
2019 (3)
2015 (3)
2021 (2)
2020 (2)
2017 (2)
2014 (1)
2013 (1)
2023 (1)
2018 (1)
2011 (1)
2005 (1)

Lab affiliation

China agricultural university (1)
School of life science and technology, Southeast University, China (1)
Sun Yat-sen Memorial Hospital,Sun Yat-sen University 107 Yanjiang West Road Guangzhou 510120, P. R. China (1)

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GlmS plays a key role in the virulence and biofilm formation ability of Staphylococcus aureus promoted by advanced glycation end products

Staphylococcus aureus (S. aureus) is well known for its biofilm formation ability and is responsible for serious, chronic refractory infections worldwide. We previously demonstrated that advanced glycation end products (AGEs), a hallmark of chronic hyperglycemia in diabetic tissues, enhanced biofilm...

ORGANISM(S): Staphylococcus aureus

2024-05-22 | PXD046076 | Pride

Sensing Ceramides by CYSLTR2 and P2RY6 to Aggravate Atherosclerosis

Recent evidence shows elevated circulating long-chain ceramide levels predicts atherosclerotic cardiovascular disease (ASCVD) independently of cholesterol. Although targeting ceramides signaling may provide therapeutic benefits beyond the treatment of hypercholesterolemia, the underlying mechanis...

2025-04-15 | MTBLS11925 | MetaboLights

Neuroligin 2 Governs Synaptic Morphology and Function Through RACK1-Cofilin Signaling in Drosophila

Neuroligins are transmembrane cell adhesion proteins well-known for their genetic links to autism spectrum disorders. Neuroligins can function by regulating the actin cytoskeleton, however the factors and mechanisms involved are still largely unknown. Here, using the Drosophila neuromuscular junctio...

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2023-10-06 | PXD045754 | Pride

Lc-ms Drosophila Neuroligin2

UV-B Radiation Exhibited Tissue-Specific Regulation of Isoflavone Biosynthesis in Soybean Cell Suspension Cultures.

Not available

S-EPMC11312073 | biostudies-literature

SUMOylated MAFB promotes colorectal cancer tumorigenesis.

Not available

S-EPMC5347783 | biostudies-literature

Better Response and Prognosis of Venetoclax Plus Hypomethylating Agents Over Intensive Chemotherapy in Young Adults With Newly Diagnosed ASXL1-Mutated Acute Myeloid Leukemia.

Not available

S-EPMC12272307 | biostudies-literature

ASC Regulates Subcutaneous Adipose Tissue Lipogenesis and Lipolysis via p53/AMPKα Axis.

Not available

S-EPMC9456541 | biostudies-literature

Non-invasive assessment of activated renal macrophages by imaging of colony-stimulating factor 1 receptor in mouse model with ischemic acute kidney injury.

Not available

S-EPMC12750732 | biostudies-literature

LIC phosphorylated by PI4Kγ7, LC-MS/MS

High yield and wide adaptation of rice is of significance for more grain supply and food security. Here, we report a type II phosphatidylinositol 4-kinase, PI4Kγ7, harboring a PI3/PI4 kinase domain, which positively regulates rice yield and affords wide adaptation of rice. We show that PI4Kγ7 intera...

ORGANISM(S): Oryza sativa (Rice)

2025-12-08 | PXD068616 | Pride

Rice， lc-msms

Sarcopenia index is a superior prognostic marker to creatinine-cystatin C ratio in older adults with hip fracture.

Not available

S-EPMC12797931 | biostudies-literature

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69 Results

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