Xu Na N - OmicsDI

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Unknown (572)
Transcriptomics (83)
Proteomics (73)
Genomics (34)
Metabolomics (16)
Multiomics (3)
Other (1)

Organisms

Homo sapiens (90)
Aerococcus urinae NBRC 15544 = CCUG 36881 (31)
Andropogon gerardi (31)
Bacteria (31)
Bartonella quintana JK 31 (31)
Canis lupus familiaris (31)
Cnidaria (31)
Ectopseudomonas oleovorans CECT 5344 (31)
Ensifer adhaerens (31)
Halictus scabiosae (31)
Mus musculus (26)
Arabidopsis thaliana (5)
Drosophila melanogaster (5)
Citrus sinensis (3)
Oryza sativa (3)
Macaca fascicularis (2)
Saccharomyces cerevisiae (2)
Rattus norvegicus (2)
Sphingomonas sp. ATCC 31555 (1)
Rhodococcus opacus (1)
Solanum pimpinellifolium (1)
Nicotiana attenuata (1)
Fragaria x ananassa (1)
Gallus gallus (1)
Sus scrofa (1)
Danio rerio (1)
Macaca fascicularis fascicularis (1)
Paenibacillus polymyxa (1)
Severe acute respiratory syndrome coronavirus 2 (1)
unidentified (1)

Repository

biostudies-arrayexpress (100)
pride (31)
iProX (21)
EGA (17)
MetaboLights (16)
PeptideAtlas (16)
MassIVE (4)
GPMDB (1)
jPOST (1)

Tissue

Plasma Non-glyco (11)
Cell culture (7)
Plant cell (4)
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Epithelial cell (2)
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HEK-293 cell (1)
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Heart (1)
Lens (1)
Macrophage (1)
Permanent cell line cell (1)
Prostate gland (1)
Small intestine (1)
Spleen (1)
Testis (1)

Disease

Disease free (3)
VSV infection (1)
Not Available (1)
Breast cancer (1)
Colorectal cancer (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (16)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (7)
Bottom-up proteomics (6)
Mass spectrometry assay (4)
Gel-based experiment (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (14)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina Genome Analyzer IIx (2)
Liquid Chromatography MS - - reverse phase (2)
Illumina iScan system (1)
QIAsymphony SP (1)
Illumina NovaSeq X (1)
HiSeq X Ten (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Instrument (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos Pro (1)
Q Exactive HF (1)
GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
Liquid Chromatography MS - alternating - direct infusion (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Matrix-assisted laser desorption-ionisation imaging MS - (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2015 (32)
2014 (21)
2016 (18)
2024 (14)
2019 (13)
2012 (11)
2025 (11)
2023 (10)
2026 (9)
2013 (9)
2022 (7)
2021 (7)
2020 (6)
2011 (6)
2018 (4)
2008 (4)
2007 (3)
2010 (2)
2017 (1)
2009 (1)

UNIPROT ID/AC

A0A024RC46 (16)
A5A3E0 (16)
A6NNZ2 (16)
B3KML9 (16)
B4DHB3 (16)
B4DL86 (16)
B4DRV9 (16)
B4DY08 (16)
B4E3A4 (16)
C9JM50 (16)
E7EX29 (16)
G8JLB6 (16)
H0YM50 (16)
H7BZ94 (16)
I3L4N8 (16)
J3KPS3 (16)
J3QRK5 (16)
M0QZ52 (16)
O00299 (16)
O14556 (16)
O14818 (16)
O60812 (16)
O75369 (16)
O75369-8 (16)
O75694 (16)
O76013 (16)
O76015 (16)
O95678 (16)
P00338 (16)
P00338-3 (16)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (8)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:28842 (4)
CHEBI:15741 (4)
CHEBI:30887 (4)
CHEBI:142219 (3)
CHEBI:67057 (3)
CHEBI:24848 (3)
CHEBI:24266 (3)
CHEBI:17992 (3)
CHEBI:30805 (3)
CHEBI:64549 (3)
CHEBI:64566 (3)
CHEBI:64561 (3)
CHEBI:26984 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:28757 (3)
CHEBI:28300 (3)
CHEBI:16708 (3)
CHEBI:15760 (3)
CHEBI:25017 (3)
CHEBI:17754 (3)
CHEBI:16551 (3)
CHEBI:16865 (3)
CHEBI:16235 (3)
CHEBI:17568 (3)
CHEBI:27266 (3)
CHEBI:16449 (3)
CHEBI:17053 (3)
CHEBI:40547 (3)

Metabolite Name

Uracil (4)
Succinic acid (4)
Fumaric acid (4)
Palmitaldehyde (3)
Threonic acid (3)
Glycine (3)
Valine (3)
Melibiose (3)
Pyroglutamic acid (3)
Syringic acid (3)
Gluconic acid (3)
2-Hydroxyhexadecanoic acid (3)
Caffeic acid (3)
4-Hydroxybenzoic acid (3)
Xanthosine (3)
4-Hydroxybenzaldehyde (3)
Isocitric acid (3)
Asparagine (3)
Serine (3)
Fructose (3)
Adenosine (3)
Alanine (3)
Uridine 5'-diphosphate (3)
Palmitic acid (3)
L-Tryptophan (3)
Glutamine (3)
Dihydroxyacetone phosphate (3)
Azelaic acid (3)
Adenine (3)
Galactinol (3)

Modification

4x(15)N labeled L-arginine (1)
6-dioxaoctanediamine derivatized cysteine (1)
N6 (1)

Study type

RNA-seq of coding RNA (31)
Transcription profiling by array (25)
ChIP-seq (11)
ChIP-chip by tiling array (5)
Methylation profiling by high throughput sequencing (5)
Methylation profiling by array (4)
Other (3)
RNA-seq of non coding RNA (3)
Transcription profiling by RT-PCR (2)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA from single cells (2)
MeDIP-seq (1)
Animal - One-color microarray (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2022 (80)
2020 (67)
2025 (65)
2021 (63)
2024 (59)
2023 (52)
2018 (37)
2019 (36)
2017 (36)
2015 (33)
2016 (32)
2014 (27)
2013 (22)
2012 (19)
2011 (12)
2026 (10)
2009 (7)
2010 (5)
2007 (5)
2008 (4)
2001 (1)

Lab affiliation

Carnegie Institution at Stanford (2)
Carnegie MS Facility (2)
Carnegie Mass Spec Facility (2)
1Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
6Department of Molecular Science/UT Health Rio Grande Valley, USA (1)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Boston Childrens Hospital Harvard Medical School (1)
Carnegie MS facility (1)
Carnegie Mass Spectrometry Facility (1)
Department of Dermatology, Second Affiliated Hospital of Naval Medical University, Shanghai，200003, China (1)
Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto (1)
Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA (1)
Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA (1)
Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. (1)
Director of Carnegie MS facility (1)
Eye Center of the 2nd Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang Province, China (1)
Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences, Shanghai Medical College, Fudan University, Shanghai, China. (1)
Mayo Clinic (1)
Osaka Univ. (1)
QBI Director and Professor in Cellular and Molecular Pharmacology, UCSF (1)
Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine， 33 Life Science Park Road, Beijing 102206, P.R. China. Tel 0086-10-80727777 EXT 1314 (1)
Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences.Shenzhen 518055，China (1)
State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, Artemisinin Research Center, and Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences (1)
State Key Laboratory of Conservation and Utilization of Bio-Resources in Yunnan and Center for Life Science, School of Life Sciences, Yunnan University, 650504 Kunming, China (1)
The Institute of Cancer Research (1)
USC Viterbi School of Engineering, Mork Family Dept. of Chemical Engineering (1)
University of Dundee (1)
Zilkha Neurogenetic Institute, University of Southern California, Los Angeles, CA, USA (1)

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Diagnostic Potential of Plasma IgG N-glycans in Discriminating Thyroid Cancer from Benign Thyroid Nodules and Healthy Controls

BACKGROUND: Novel biomarkers are urgently needed to distinguish between benign and malignant thyroid nodules and detect thyroid cancer in the early stage. The associations between serum IgG N-glycosylation and thyroid cancer risk have been revealed. We aimed to explore the potent...

2021-09-01 | MTBLS2935 | MetaboLights

Expression data from MDA-MB-231 cell line treated with Zoledronate, or Fluvastatin, or mock-treated control cells.

Statins and bisphosponates (BPs) are two distinct classes of isoprenoid pathway inhibitors targeting HMG-CoA reductase (upstream enzyme) and Farnesyl-pyrophospate synthase (downstream enzyme) respectively. Here we conducted a comparative study of two representatives of these classes, fluvastatin (Fl...

ORGANISM(S): Homo sapiens

2012-01-01 | E-GEOD-33552 | biostudies-arrayexpress

Affinity purification of biotinylated AtACINUS and Mass Spectrometric analysis to identify PTMs on AtACINUS

AtACINUS protein is involved in regulation of alternative transcription and splicing (AS). Previously we have identified O-GlcNAcylation and phosphorylation sites on AtACINUS using LWAC and IMAC enrichment (Xu et al., 2017). To identify more modification sites, we have created AtACINUS-YFP-TurboID/a...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2020-12-02 | PXD020749 | Pride

Co-Immunoprecipitation of TMEM65

Mitochondrial Ca2+ transport is a critical process in cellular physiology. One pathway for export occurs via Na+/Ca2+exchange (mito-NCX) machinery. TMEM65 has recently been shown to be crucial for mito-NCX activity, but its precise mechanistic role remains unknown. To evaluate whether TMEM65 forms a...

ORGANISM(S): Homo sapiens (Human)

2026-02-09 | PXD064897 | Pride

Co-ip Lc-ms/ms

Ocular Inoculation of Toad Venom: Toxic Cataract and Proteomic Profiling

Purpose: To report a singular case of cataract caused by toad venom inoculation and to scrutinize the pathological mechanisms through proteomic sequencing of the lens specimen. Methods: A young Chinese male presented with progressively deteriorating vision in his right eye subsequent to a history of...

ORGANISM(S): Homo sapiens (Human)

2025-05-13 | PXD058328 | Pride

Toad venom venom inoculation toxic cataract 4d label-free quantitative proteomics na+/k+-atpase

Na-rich layered Na₂Ti_1-xCr_xO_3-x/2 (x = 0, 0.06): Na-ion battery cathode materials with high capacity and long cycle life.

Not available

S-EPMC5428299 | biostudies-literature

Impact of Na+ permeation on collective migration of pulmonary arterial endothelial cells.

Not available

S-EPMC8064576 | biostudies-literature

Evolutionary history and phylodynamics of influenza A and B neuraminidase (NA) genes inferred from large-scale sequence analyses.

Not available

S-EPMC3394769 | biostudies-literature