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ProteomicsA. muciniphila, B. longum, E. coli, headspace metabolites
Culture headspaces of A. muciniphila, B. longum, E. coli, and sterile media controls using sorbent tubes and GCMS (Figure 3C)
ORGANISM(S): Bifidobacterium Longum Subsp. Longum (ncbitaxon:1679) Escherichia Coli (ncbitaxon:562) Bhi-mucin Akkermansia Muciniphila (ncbitaxon:239935) 
2024-07-15 | MSV000095341 | MassIVE
ProteomicsExamples of output air collected from a mice ventilator
Examples of output air collected from a mice ventilator. mzML files used to generate Figure 6S C.
ORGANISM(S): C57bl/6 Mice 
2025-07-30 | MSV000098687 | MassIVE
MetabolomicsSmall intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders
Small intestinal bacterial overgrowth (SIBO) has been implicated in symptoms associated with functional gastrointestinal disorders (FGIDs), though mechanisms remain poorly defined and treatment involves non-specific antibiotics. Here we show that SIBO based on duodenal aspirate culture reflects an o...
2019-04-30 | MTBLS876 | MetaboLights
TranscriptomicsA Universal RNA Polymerase II CTD Cycle Is Orchestrated by Complex Interplays Between Kinase, Phosphatase and Isomerase Enzymes Along Genes
Transcription by RNA polymerase II (RNAPII) is coupled to mRNA processing and chromatin modifications via the C-terminal domain (CTD) of its largest subunit, consisting of multiple repeats of the heptapeptide YSPTSPS. Pioneering studies showed that CTD serines are differentially phosphorylated along...
ORGANISM(S): Saccharomyces cerevisiae 
2012-02-01 | E-GEOD-29403 | biostudies-arrayexpress
UnknownSubtypes of anterior circulation large artery occlusions with acute brain ischemic stroke.
Not available
S-EPMC7044197 | biostudies-literature
TranscriptomicsDSIF and RNA polymerase II CTD Phosphorylation Coordinate the Recruitment of Rpd3S to Actively Transcribed Genes
Histone deacetylase Rpd3 is part of two distinct complexes: the large (Rpd3L) and small (Rpd3S) complexes. While Rpd3L targets specific promoters for gene repression, Rpd3S is recruited to ORFs to deacetylate histones in the wake of RNA polymerase II, to prevent cryptic initiation within genes. Meth...
ORGANISM(S): Saccharomyces cerevisiae 
2010-11-28 | E-GEOD-22636 | biostudies-arrayexpress
ProteomicsBreath Metabolites from Healthy and Asthmatic Children
mzML files used to generate Figure 1 A-F, Figure S1 D-E, Figure 6 B, Figure S5 D-F. Breath samples collected from healthy and asthmatic children
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-07-15 | MSV000095340 | MassIVE
ProteomicsMetabolites from anaerobic culture headspace
This is GCxGC MS data from headspace VOCs from A. muciniphila, B. thetaiotaomicron, Collinsella aerofaciens, E. coli, and Ruminococcus torques and sterile media controls. Raw files in CDF format. (Fig 4A , Fig 5, Fig 3B from associated publication)
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Bacteroides Thetaiotaomicron (ncbitaxon:818) Collinsella Aerofaciens (ncbitaxon:74426) Akkermansia Muciniphila (ncbitaxon:239935) [ruminococcus] Torques (ncbitaxon:33039) 
2025-07-30 | MSV000098693 | MassIVE
ProteomicsThe exhaled breath of monocolonized mice
This is GCxGC MS raw data from exhaled breath from colonized gnotobiotic mice with one of five common gut commensals including A. muciniphila, B. thetaiotaomicron, Collinsella aerofaciens, E. coli, and Ruminococcus torques and sterile media controls. Raw files in CDF format. (Fig 4B, Fig 5 from asso...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Gnotobiotic Mice Bacteroides Thetaiotaomicron (ncbitaxon:818) Collinsella Aerofaciens (ncbitaxon:74426) Akkermansia Muciniphila (ncbitaxon:239935) [ruminococcus] Torques (ncbitaxon:33039) 
2025-07-30 | MSV000098692 | MassIVE
ProteomicsThe exhaled breath of humanized mice
This is GCxGC MS data from exhaled breath from humanized mice as well as germ-free controls. Raw files in CDF format (Figure S4D-F of associated publication)
ORGANISM(S): C57bl/6 Mice 
2025-08-15 | MSV000098837 | MassIVE
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