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TranscriptomicsLudwig Institute/UCSD ENCODE project June 2007 Release
The readout of genome information is controlled by transcriptional regulatory elements, but a comprehensive view of the combinatorial control by these DNA sequences, which bind regulatory protein and/or the modified histones in regulating gene transcription, is clearly preliminary. We have developed...
ORGANISM(S): Homo sapiens 
2007-06-01 | E-GEOD-7872 | biostudies-arrayexpress
TranscriptomicsLudwig Institute/UCSD ENCODE project August 2007 Release
The readout of genome information is controlled by transcriptional regulatory elements, but a comprehensive view of the combinatorial control by these DNA sequences, which bind regulatory protein and/or the modified histones in regulating gene transcription, is clearly preliminary. We have developed...
ORGANISM(S): Homo sapiens 
2010-05-15 | E-GEOD-8887 | biostudies-arrayexpress
UnknowniROS-gPseKNC: Predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition.
Not available
S-EPMC5085147 | biostudies-literature
UnknownOut of Africa: Biogeography and diversification of the pantropical pond skater genus Limnogonus Stal, 1868 (Hemiptera: Gerridae).
Not available
S-EPMC5288246 | biostudies-literature
TranscriptomicsSystematic evaluation of variability in simulated ChIP-chip experiments
The most widely used method for detecting genome-wide protein-DNA interactions is chromatin immunoprecipitation on tiling microarrays, commonly known as ChIP-chip. Here, we conducted the first objective analysis of tiling array platforms, amplification procedures, and signal detection algorithms in ...
ORGANISM(S): Homo sapiens 
2010-05-14 | E-GEOD-10112 | biostudies-arrayexpress
ProteomicsSLX4 and SLX4IP TAP-MS - SLX4IP acts with SLX4 and XPF-ERCC1 to promote interstrand crosslink repair
Interstrand crosslinks (ICLs) are highly toxic DNA lesions, which are repaired via a complex process that requires the coordination of several DNA repair pathways. Defects in ICL repair result in Fanconi anemia (FA), which is diagnosed with bone marrow failure, development abnormalities and high inc...
ORGANISM(S): Homo sapiens (Human) 
2019-09-13 | PXD012521 | Pride
Sfb Slx4 Tap-ms Slx4ip 
ProteomicsPCNA interactome - SLX4IP acts with SLX4 and XPF-ERCC1 to promote interstrand crosslink repair
We examined the complexity of replication fork composition upon DNA damage by employing a PCNA-based proteomic screen to uncover known and new players involved in replication and replication stress response. We used camptothecin or ultraviolet radiation, that lead to fork-blocking lesions, to establ...
ORGANISM(S): Homo sapiens (Human) 
2018-12-14 | PXD011727 | Pride
Pcna Bioid Interactome 
UnknownInvolvement of IL-10 and TGF-β in HLA-E-mediated neuroblastoma migration and invasion.
Not available
S-EPMC5190101 | biostudies-literature
UnknownActivation of the NFκB signaling pathway in IL6+CSF3+ vascular endothelial cells promotes the formation of keloids.
Not available
S-EPMC9445273 | biostudies-literature
UnknownPrognostic value of ZEB-1 in solid tumors: a meta-analysis.
Not available
S-EPMC6598232 | biostudies-literature
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