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GenomicsGenome-wide distribution of UHRF2 and ZNF618 in 293T cells.
We have identified ZNF618 as a novel binding partner of UHRF2. We have found that UHRF2 and ZNF618 co-localize at many genomic loci. Examination of genome-wide distribution of SFB-tagged UHRF2 and ZNF618 in 293T cells using ChIP-seq.
ORGANISM(S): Homo sapiens 
2016-05-31 | E-GEOD-80037 | biostudies-arrayexpress
ProteomicsImmunoprecipitation (IP)-mass spectrometry analysisin of REIIBP in Hela cells
To investigate the functions of REIIBP, we conducted the immunoprecipitation (IP)-mass spectrometry analysis to identify the interacting proteins of REIIBP.
ORGANISM(S): Homo sapiens (Human) 
2025-10-06 | PXD062854 | Pride
Lc-ms Human cells Reiibp 
ProteomicsNBS1 facilitates pre-ribosomal RNA biogenesis
Mutations of NBS1 gene result in Nijmegen breakage syndrome (NBS), and the gene encodes NBS1 that forms a complex with MRE11 and RAD50 and participates in DNA damage repair. However, the molecular mechanism by which the mutations of NBS1 cause clinical phenotypes of NBS, such as craniofacial dysmorp...
ORGANISM(S): Homo sapiens (Human) 
2025-09-15 | PXD056042 | Pride
Pre-ribosomal rna Nbs1 Nucleolus 
ProteomicsRECQ5 mediates pre-rRNA processing in nucleolus
explore the biological function of RECQ5 in nucleolus
ORGANISM(S): Homo Sapiens 
2024-11-19 | PXD058022 |
ProteomicsLC-MS/MS-based profiling of REIIBP-mediated methylation substrates within the nucleolus
Since REIIBP contains a complete SET domain and is associated with pre-rRNA processing factors in the nucleolus, we ask if REIIBP may methylate pre-rRNA processing factors in the nucleolus.To investigate this, we conducted LC-MS/MS analysis to identify potential protein substrates for methylation.
ORGANISM(S): Homo sapiens (Human) 
2025-10-06 | PXD062856 | Pride
Hela cells Reiibp， methylation 
ProteomicsQuantitative phosphoproteomic analysis of DNA-PK substrates
We conducted a TMT based phosphoproteomic analysis to identify DNA-PK substrates.
ORGANISM(S): Homo Sapiens 
2023-01-15 | PXD039454 |
GenomicsOGT, H2B S112GlcNAc, TET2 ChIP-seq results
TET2 directly interacts with OGT, which is important for the chromatin association of OGT in vivo. Although this specific interaction does not regulate the enzymatic activity of TET2, it facilitates OGT-dependent histone O-GlcNAcylation. Moreover, OGT associates with TET2 at transcription starting s...
ORGANISM(S): Mus musculus 
2012-12-11 | E-GEOD-41720 | biostudies-arrayexpress
TranscriptomicsExpression data from ES cells
TET2 directly interacts with OGT, which is important for the chromatin association of OGT in vivo. Although this specific interaction does not regulate the enzymatic activity of TET2, it facilitates OGT-dependent histone O-GlcNAcylation. Moreover, OGT associates with TET2 at transcription starting s...
ORGANISM(S): Mus musculus 
2012-12-11 | E-GEOD-41721 | biostudies-arrayexpress
GenomicsH2A.B and MeDIP sequence result
H2A.B is a unique histone H2A variant that shares only 40 ~ 50 % sequence identity with canonical H2A. It has only been identified in mammals and has quickly evolved with remarkable sequence diversity among different species. H2A.B is ubiquitously expressed in most cells and tissues. It is mainly de...
ORGANISM(S): Mus musculus 
2013-12-24 | E-GEOD-48892 | biostudies-arrayexpress
TranscriptomicsExpression data from ES cells
H2A.B is a unique histone H2A variant that shares only 40 ~ 50 % sequence identity with canonical H2A. It has only been identified in mammals and has quickly evolved with remarkable sequence diversity among different species. H2A.B is ubiquitously expressed in most cells and tissues. It is mainly de...
ORGANISM(S): Mus musculus 
2013-12-24 | E-GEOD-48446 | biostudies-arrayexpress
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