Zhang Quan Q - OmicsDI

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Unknown (392)
Proteomics (39)
Metabolomics (10)
Transcriptomics (4)
Genomics (1)

Organisms

Andropogon gerardi (21)
Bacteria (21)
Canis lupus familiaris (21)
Cnidaria (21)
Cricetulus griseus (21)
Eukaryota (21)
Fasciola (21)
Hepatitis B virus (21)
Human betaherpesvirus 5 (21)
Madurella mycetomatis (21)
Mesocricetus auratus (21)
Miscanthus x giganteus (21)
Mus musculus (21)
Mycobacterium tuberculosis (21)
Orthoflavivirus (21)
Panicum virgatum (21)
Platyhelminthes (21)
Pseudomonas aeruginosa AES-1R (21)
Rattus norvegicus (21)
Rattus rattus (21)
Rhodococcus jostii RHA1 (21)
Saccharomyces cerevisiae (21)
Homo sapiens (12)
Mus musculus (3)
Bombyx mori (1)
Oryza sativa (1)
Setaria italica (1)
Capsella rubella (1)
Gallus gallus (1)
Pseudomonas aeruginosa PAO1 (1)

Repository

pride (21)
iProX (16)
MetaboLights (8)
biostudies-arrayexpress (4)
GNPS (2)
MassIVE (2)
EGA (1)

Tissue

Cell culture (5)
Permanent cell line cell (2)
Photosynthetic cell (2)
Whole body (2)
Blood serum (1)
Brain (1)
Brown adipocyte (1)
Cell suspension culture (1)
Early embryonic cell (1)
Embryo (1)
Gastric gland (1)
HEK-293T cell (1)
Hepatocyte (1)
Kernel (1)
Macrophage (1)
Neck (1)

Disease

Bone cancer (1)
Cerebrovascular disease (1)
Gastric adenocarcinoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Renal cell carcinoma (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (11)
Mass spectrometry (8)
Data-independent acquisition (3)
Gel-based experiment (2)
SWATH MS (2)
Affinity proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Q Exactive HF (2)
TripleTOF 6600 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2020 (10)
2022 (8)
2025 (8)
2024 (7)
2026 (5)
2023 (5)
2021 (2)
2017 (2)
2016 (1)
2012 (1)
2011 (1)
2010 (1)
2019 (1)
2018 (1)

CHEBI ID

CHEBI:30746 (4)
CHEBI:18183 (4)
CHEBI:41674 (3)
CHEBI:143054 (3)
CHEBI:32980 (3)
CHEBI:82984 (3)
CHEBI:179646 (3)
CHEBI:46961 (3)
CHEBI:32389 (3)
CHEBI:15367 (3)
CHEBI:34687 (3)
CHEBI:412516 (3)
CHEBI:28621 (3)
CHEBI:34698 (3)
CHEBI:28044 (3)
CHEBI:29069 (3)
CHEBI:32374 (3)
CHEBI:15929 (3)
CHEBI:16566 (3)
CHEBI:116314 (3)
CHEBI:27266 (3)
CHEBI:17394 (3)
CHEBI:88542 (3)
CHEBI:16196 (3)
CHEBI:28867 (3)
CHEBI:27468 (3)
CHEBI:27248 (3)
CHEBI:74475 (3)
CHEBI:74438 (3)
CHEBI:165591 (3)

Metabolite Name

Benzoic acid (4)
Butylparaben (3)
Phthalic acid (3)
Valine (3)
Desaminotyrosine (3)
Oleic acid (3)
Creatinine (3)
(-)-Rhododendrin (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
2-linoleoylglycerol (2)
1-Monopalmitoylglycerol (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-oleoyl-sn-glycero-3-phosphoethanolamine (2)
1-Tetradecylamine (2)
2-((2E)-3,7-Dimethyl-2,6-octadienyl)-5,6-dimethoxy-3-methyl-1,4-benzenediol (2)
2-(12-Tridecyn-1-yl)furan (2)

Study type

RNA-seq of coding RNA (2)
Transcription profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (55)
2025 (51)
2022 (51)
2023 (49)
2024 (35)
2020 (30)
2017 (25)
2019 (24)
2016 (16)
2026 (14)
2018 (13)
2015 (10)
2011 (6)
2014 (6)
2012 (3)
2010 (2)
2013 (2)
2009 (2)
2007 (1)
2006 (1)

Lab affiliation

Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (2)
School of life sciences,Nanjing University,Nanjing,China (2)
1. Institute of Comparative Medicine, College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China 2. Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou 225009, China (1)
Amgen (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences,Guangzhou, China (1)
Department of Chemistry, the University of Hong Kong (1)
Department of Genetics, University of Wisconsin-Madison, Madison, WI 53706, USA (1)
Department of Pathology and Duke Cancer Institute, Duke University School of Medicine,Durham, NC 27710, USA. (1)
Department of System Biology, School of Life Sciences, Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, Shenzhen Key Laboratory of Cell Microenvironment, Southern University of Science and Technology, Shenzhen, 518055, China. (1)
Gansu agricultural university, college of animal science and technology (Lanzhou of Gansu, China) (1)
Hainan University (1)
Huazhong University of Science and Technology 13 Hangkong Road, Wuhan, 430030 P.R. China (1)
Orthoped OncoloOrthopedic Oncology Institute, Department of Orthopedic Surgery, Tangdu Hospital, Fourth Military Medical UniversityInstitute, Department of Orthopedic Surgery, Tangdu HospitalOrthopec (1)
School of Food Science and Engineering, Key Laboratory of Food Nutrition and Functional Food of Hainan Province, Hainan University, Haikou 570228, China Collaborative Innovation Center of One Health, Hainan University (1)
School of Pharmacy, Anhui Medical University, Hefei, China (1)
Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Science (1)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (1)
Wuhan University School of Basic Medical Sciences,Wuhan university,China (1)

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Genomic and metabolomic insights into the antimicrobial compounds and plant growth-promoting potential of Bacillus velezensis Q-426.

Not available

S-EPMC10548584 | biostudies-literature

Associations between Serum Mineral Nutrients, Gut Microbiota, and Risk of Neurological, Psychiatric, and Metabolic Diseases: A Comprehensive Mendelian Randomization Study.

Not available

S-EPMC10818407 | biostudies-literature

Effect of Six Lactic Acid Bacteria Strains on Physicochemical Characteristics, Antioxidant Activities and Sensory Properties of Fermented Orange Juices.

Not available

S-EPMC9265423 | biostudies-literature

Transcriptome sequencing of Foxtail millet Setaria italica for different tissues

Transcriptome sequencing of Foxtail millet Setaria italica (Zhang-gu) for different tissues. Four RNA pools were created corresponding to four different tissues: root, leaf, stem, spica (tassel) at developmental stage, then each pool was sequenced.

ORGANISM(S): Setaria italica

2012-03-31 | E-GEOD-36391 | biostudies-arrayexpress

Mass spectrometry of circulating antigens products isolated from sera of mice infected with Toxoplasma gondii tachyzoites

Toxoplasma gondii is a ubiquitous apicomplexan protozoan parasite that can infect all warm-blooded animals and lead to toxoplasmosis. Discovering efficient methods for diagnosing T. gondii infection and developing vaccine candidates are essential for controlling this disease. Circulating antigens (C...

ORGANISM(S): Toxoplasma gondii RH

2021-01-04 | PXD021938 | Pride

A c-di-AMP receptor mediates epithelial adhesion of Lactiplantibacillus plantarum

Cyclic di-adenosine monophosphate (c-di-AMP) is a crucial second messenger used by bacteria to mediate bacterial-host interactions. However, its roles in Lactiplantibacillus plantarum remain poorly understood. Here, we identify RwpL, which consists solely of an HTH domain, as a c-di-AMP receptor in ...

ORGANISM(S): Lactobacillus plantarum WCFS1

2026-05-25 | PXD078286 | Pride

Colonization C-di-amp Lactiplantibacillus plantarum

A WYL transcription factor regulates Lactiplantibacillus plantarum intestinal colonization via perceiving c-di-GMP

The WYL transcription factor (LP_RS00300) is a c-di-GMP effector in L. plantarum WCFS1. LP_RS00300 binds to a special motif within the coding sequence, impeding the transcriptional elongation of LP_RS05345 and LP_RS05225, which encode mucus binding proteins (MucBPs). The perception of c-di-GMP by th...

ORGANISM(S): Lactobacillus plantarum WCFS1 Bacteria

2025-02-14 | PXD053948 | Pride

C-di-gmp receptor Wyl transcription factor Lactiplantibacillus plantarum

Proteomic analysis of cell cycle arrest and differentiation induction caused by ATPR, a derivative of all-trans retinoic acid, in human gastric cancer SGC-7901 cells

Experimental design: Peptides digested from the total cellular proteins were analyzed by reverse phase LC–MS/MS followed by a label-free quantification analysis. The SEQUEST search engine was used to identify proteins and bioinformatics resources were used to investigate the involved pathways for th...

ORGANISM(S): Homo sapiens (Human)

2017-02-13 | PXD005605 | Pride

Atpr，cell cycle arrest and differentiation，proteomics analysis，pi3k-akt-foxo-p27kip1 pathway，sgc-7901 cells

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

Integrating Network Analysis and Metabolomics to Reveal Mechanism of Huaganjian Decoction in Treatment of Cholestatic Hepatic Injury.

Not available

S-EPMC8807561 | biostudies-literature

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