site mapping - OmicsDI

Show results for

Unknown (3648)
Genomics (1458)
Transcriptomics (1301)
Proteomics (409)
Other (83)
Genomic (8)
Methylation profiling (7)
Metabolomics (7)

Organisms

Homo sapiens (943)
Mus musculus (518)
Drosophila melanogaster (234)
Saccharomyces cerevisiae (106)
Arabidopsis thaliana (76)
Caenorhabditis elegans (51)
Rattus norvegicus (32)
Danio rerio (27)
Schizosaccharomyces pombe (18)
Zea mays (16)
Oryza sativa (14)
Gallus gallus (12)
Sus scrofa (10)
Escherichia coli (10)
Triticum aestivum (9)
Escherichia coli str. K-12 substr. MG1655 (9)
Drosophila simulans (8)
synthetic construct (8)
Bos taurus (8)
Plasmodium falciparum (8)
Saccharomyces cerevisiae S288C (6)
Drosophila yakuba (5)
Drosophila pseudoobscura (5)
Streptomyces venezuelae (5)
Staphylococcus aureus (5)
Macaca mulatta (4)
Mycobacterium tuberculosis (4)
Ovis aries (4)
Streptomyces griseus (3)
Trypanosoma brucei (3)

Organisms

Homo sapiens (178)
Mus musculus (64)
Saccharomyces cerevisiae (32)
Arabidopsis thaliana (9)
Drosophila melanogaster (7)
Clostridioides difficile (5)
Oryza sativa (4)
Rattus norvegicus (4)
Schizosaccharomyces pombe (3)
Caenorhabditis elegans (3)
Ipomoea batatas (3)
Bacillus subtilis (3)
Danio rerio (3)
Plasmodium falciparum (3)
Corchorus olitorius (2)
Oncorhynchus tshawytscha (2)
Anguilla japonica (2)
Xenopus laevis (2)
Candida albicans (2)
Escherichia coli (2)
Pseudomonas aeruginosa (2)
Staphylococcus aureus (2)
Bos taurus (2)
synthetic construct (2)
Cloning vector pBR322 (1)
Nitratidesulfovibrio vulgaris (1)
Crocodylus moreletii (1)
Avena barbata (1)
Clostridioides difficile 630 (1)
Breviolum minutum Mf 1.05b.01 (1)

Repository

biostudies-arrayexpress (1956)
ENA (551)
pride (320)
geo (308)
MassIVE (48)
EGA (34)
iProX (19)
PeptideAtlas (9)
dbGaP (8)
jPOST (8)
MetaboLights (6)
EVA (3)
GNPS (1)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (83)
Epithelial cell (28)
Liver (13)
T cell (13)
Permanent cell line cell (11)
Plant cell (11)
Others (9)
Brain (9)
HeLa cell (9)
Leaf (9)
Blood (7)
Blood plasma (7)
B cell (6)
Blood serum (6)
Heart (6)
Hepatocyte (6)
Lung (6)
Macrophage (6)
Whole body (6)
Kidney (5)
Root (5)
Fibroblast (4)
Blood cell (3)
Cell suspension culture (3)
Colon (3)
Early embryonic cell (3)
Embryo (3)
Monocyte (3)
Pollen (3)
Seed (3)

Disease

Disease free (9)
Cervix carcinoma (8)
Breast cancer (5)
Normal (4)
Acute leukemia (4)
Colon cancer (4)
Hyperphosphatemic familial tumoral calcinosis (3)
Lymphoma (3)
Acute myeloid leukemia (2)
Chagas disease (2)
Cystic fibrosis (2)
Influenza (2)
Melanoma (2)
Prostate adenocarcinoma (2)
Myelodysplasia (1)
Inflammatory bowel disease (1)
Skin clear cell carcinoma (1)
Malignant fibrous histiocytoma (1)
Short stature-onychodysplasia-facial dysmorphism-hypotrichosis syndrome (1)
Breast carcinoma (1)
Control (1)
Not Available (1)
Acrodysostosis (1)
Alzheimer's disease (1)
Amyloidosis (1)
Amyotrophic lateral sclerosis (1)
Avian influenza (1)
Babesiosis (1)
Brain cancer (1)
Breast ductal carcinoma (1)

Technology Type

Mass Spectrometry (320)
Shotgun proteomics (182)
Bottom-up proteomics (66)
Affinity purification coupled with mass spectrometry proteomics (48)
Data-dependent acquisition (48)
Gel-based experiment (18)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Data-independent acquisition (8)
Top-down proteomics (7)
SWATH MS (6)
Mass spectrometry (4)
Mass spectrometry imaging (4)
Mass spectrometry assay (2)
Affinity proteomics (2)
All-ion fragmentation (2)
RNA mass spectrometry (2)
SRM/MRM (2)
Illumina Exome 250K (1)
Illumina HiSeq 2500, ILLUMINA (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II (1)
Illumina HiSeq 2000 (1)
DiaPASEF (1)
MSE (1)
Proteogenomics (1)

Instrument Platform

Illumina HiSeq 2000 (49)
Illumina NovaSeq 6000 (42)
Illumina HiSeq 2500 (38)
NextSeq 500 (34)
Illumina HiSeq 4000 (26)
Illumina MiSeq (14)
NextSeq 550 (11)
Illumina Genome Analyzer II (8)
Illumina Genome Analyzer IIx (5)
NextSeq 2000 (4)
Illumina Genome Analyzer (3)
Illumina NovaSeq X (3)
10x Genomics Chromium Controller (3)
Ion Torrent Proton (3)
Bio-Rad CFX96 Real-time System (2)
454 GS 20 (2)
Usegalaxy.org (2)
AB SOLiD 4 System (2)
NA (2)
Illumina HiSeq X (2)
Illumina HiSeq 1000 (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 3000 (2)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
Qubit 4.0 and TapeStation (1)
Element AVITI (1)
BD LSRFortessa (1)

Publication Date

2013 (357)
2014 (290)
2015 (260)
2012 (237)
2010 (219)
2011 (203)
2016 (135)
2026 (130)
2021 (105)
2025 (83)
2023 (83)
2020 (82)
2022 (77)
2024 (76)
2009 (70)
2019 (66)
2008 (63)
2018 (54)
2017 (41)
2007 (25)
2006 (9)
2005 (7)
2004 (1)

UNIPROT ID/AC

35KD_MYCTU (1)
3BHS_MYCTU (1)
3MGH_MYCTU (1)
83332.Rv1180 (1)
83332.Rv1370c (1)
83332.Rv1757c (1)
83332.Rv1763 (1)
83332.Rv2098c (1)
83332.Rv2105 (1)
83332.Rv2168c (1)
83332.Rv2278 (1)
83332.Rv2354 (1)
83332.Rv2480c (1)
83332.Rv2648 (1)
83332.Rv2815c (1)
83332.Rv3117 (1)
83332.Rv3118 (1)
83332.Rv3184 (1)
83332.Rv3186 (1)
83332.Rv3325 (1)
83332.Rv3381c (1)
83332.Rv3474 (1)
83332.Rv3514 (1)
83332.Rv3619c (1)
A85A_MYCTU (1)
A85B_MYCTU (1)
A85C_MYCTU (1)
AAC2_MYCTU (1)
ABC1_MYCTU (1)
ACDP_MYCTU (1)

ENSEMBL ID

ENSG00000170477 (6)
ENSG00000247315 (5)
ENSG00000147251 (1)

CHEBI ID

CHEBI:73039 (3)
CHEBI:86072 (2)
CHEBI:8832 (2)
CHEBI:173890 (2)
CHEBI:177599 (2)
CHEBI:182449 (2)
CHEBI:182253 (2)
CHEBI:182699 (2)
CHEBI:177514 (2)
CHEBI:177688 (2)
CHEBI:182667 (2)
CHEBI:1458 (2)
CHEBI:183730 (2)
CHEBI:41674 (2)
CHEBI:165502 (2)
CHEBI:177394 (2)
CHEBI:29735 (2)
CHEBI:168507 (2)
CHEBI:75457 (2)
CHEBI:64304 (2)
CHEBI:69081 (2)
CHEBI:17252 (2)
CHEBI:88595 (2)
CHEBI:165595 (2)
CHEBI:167578 (2)
CHEBI:89871 (2)
CHEBI:172380 (2)
CHEBI:165178 (2)
CHEBI:177477 (2)
CHEBI:174791 (2)

Metabolite Name

(-)-Rhododendrin (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
[(4Z)-5-(Methylsulfanyl)-4-penten-2-yn-1-yl]benzene (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
2-linoleoylglycerol (2)
1-Monopalmitoylglycerol (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-oleoyl-sn-glycero-3-phosphoethanolamine (2)
1-Tetradecylamine (2)
2-((2E)-3,7-Dimethyl-2,6-octadienyl)-5,6-dimethoxy-3-methyl-1,4-benzenediol (2)
2-(12-Tridecyn-1-yl)furan (2)
2,2,6,6-Tetramethyl-1-piperidinol (2)
2,3,4,9-Tetrahydro-1H-beta-carboline-1,3-dicarboxylic acid (2)
2,6-di-tert-butyl-4-ethylphenol (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)
Isobutyl benzoate (2)
3-Cyclooctyl-1,1-dimethylurea (2)
(9E,12E)-9,12-Octadecadienoic acid (2)

First Public Date

2014 (64)
2026 (60)
2023 (52)
2025 (48)
2021 (44)
2024 (37)
2022 (37)
2020 (37)
2013 (37)
2017 (31)
2019 (27)
2016 (25)
2018 (24)
2015 (23)
2012 (3)
2010 (2)

Classification

bacteria (22)
protozoa (5)
fungi (3)
viruses (3)

Modification

4'-dihydroxyphenylalanine (1)
4x(15)N labeled L-arginine (1)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

ChIP-seq (686)
RNA-seq of coding RNA (435)
Transcription profiling by array (254)
Other (90)
Comparative genomic hybridization by array (83)
Methylation profiling by high throughput sequencing (75)
RNA-seq of non coding RNA (63)
ChIP-chip by tiling array (59)
RNA-seq of coding RNA from single cells (28)
Methylation profiling by array (25)
Unknown experiment type (22)
DNA-seq (18)
ChIP-chip by array (13)
Genotyping by array (13)
Transcription profiling by tiling array (10)
Cell line - High-throughput sequencing (9)
ATAC-seq (8)
CLIP-seq (7)
High-throughput sequencing (6)
Animal - High-throughput sequencing (5)
Hi-C (5)
Human - High-throughput sequencing (4)
Proteomic profiling by array (4)
Transcription profiling by SAGE (3)
CLIP-Seq (3)
Ribo-seq (3)
CUT&RUN (3)
RNA-seq of total RNA (3)
RNAi profiling by array (2)
Spatial transcriptomics by high-throughput sequencing (2)

Release Date

2013 (488)
2015 (427)
2014 (427)
2012 (353)
2011 (324)
2010 (314)
2022 (310)
2016 (304)
2021 (289)
2025 (278)
2023 (271)
2020 (260)
2019 (243)
2024 (241)
2018 (218)
2017 (198)
2009 (143)
2008 (128)
2007 (72)
2026 (63)
2006 (56)
2005 (39)
2002 (29)
2000 (27)
2004 (25)
2001 (20)
2003 (18)
1999 (18)
1998 (12)
1997 (5)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (4)
Biological Chemistry Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, United States (3)
DIMEVET Università degli Studi di Milano (3)
Department of Chemistry and Chemical Biology, Harvard University (3)
Medical University of Vienna, Max Perutz Labs, Dr. Bohr-Gasse 9, 1030 Vienna (3)
University of Edinburgh, Institute of Genetics and Molecular Medicine, Edinburgh, Scotland, United Kingdom, EH4 2XR (3)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
Complex Carbohydrate Research Center, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA. (2)
Department of Chemistry, Stanford University (2)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. (2)
Institute of Biology II, University of Freiburg, Freiburg, Germany (2)
Lab Head (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (2)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Westlake University (2)
college of pharmacy, Nankai university,Tianjin, 300353, China (2)
1 Division of Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17 177 Stockholm, Sweden 2 Chemical Proteomics Unit, Science for Life Laboratory (SciLifeLab), SE-17 177 Stockholm, Sweden 3 Chemical Proteomics, Swedish National Infrastructure for Biological Mass Spectrometry (BioMS), SE-17 177 Stockholm, Sweden (1)
1 VIB-UGent Center for Medical Biotechnology, B9052 Ghent, Belgium; 2 Department of Biomolecular Medicine, Ghent University, B9052 Ghent, Belgium. (1)
1) Department of Cancer Biology, Dana–Farber Cancer Institute, Boston, MA, USA. 2) Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium. 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)
1: Physiology of reproduction, Veterinary Faculty, Campus of Excellence Mare Nostrum, University of Murcia. 2: IMIB-Arrixaca, Murcia, Spain. (1)
1Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. 2Analytical Instrumentation Center, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. 3Center for Quantitative Biology, PKU-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China (1)
1Department of Chemistry, Georgia State University, Atlanta, GA (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
6Department of Molecular Science/UT Health Rio Grande Valley, USA (1)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)

Previous page
1 / 693
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 693
Next page

Sort by:

Relevance

Page size

Saccharomyces cerevisiae 3' poly(A) site mapping

The use of alternative polyadenylation sites is common and affects the post-transcriptional fate of mRNA, including its stability, localization, and translation. Here we present a method for genome-wide and strand-specific mapping of poly(A) sites and quantification of RNA levels at unprecedented ef...

ORGANISM(S): Saccharomyces cerevisiae

2013-01-10 | E-GEOD-40110 | biostudies-arrayexpress

MicroMap photoproximity labeling enables small molecule binding site mapping

Proteomics data for MicroMap enabled binding site mapping

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-05-26 | MSV000092043 | MassIVE

BATSeq of ESC-FCS/ESC-2i/NSC

Single-cell polyadenylation site quantification 48 single cells each of murine embryonic stem cells maintained in FCS+LIF medium ("ESC"), embryonic stem cells maintained in serum free, 2i containing medium ("2i") and neural stem cells ("NSC") were sequenced by BATSeq, a...

ORGANISM(S): Mus musculus

2015-06-09 | E-GEOD-60768 | biostudies-arrayexpress

Mapping the biosynthetic pathway of a hybrid polyketide-nonribosomal peptide in a metazoan

Polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) hybrid systems typically use complex protein-protein interactions to facilitate direct transfer of intermediates between these multimodular megaenzymes. In the canal-associated neurons (CANs) of Caenorhabditis elegans, PKS-1 and NR...

2021-06-22 | MTBLS2313 | MetaboLights

RRHP : a tag-based approach for 5-hydroxymethylcytosine mapping at single-site resolution

We present here a novel approach called Reduced Representation 5-Hydroxymethylcytosine Profiling (RRHP), which exploits ?-glucosyltransferase (?-GT) to inhibit restriction digestion at adapters ligated to a genomic library, such that only fragments presenting glucosylated 5hmC residues at adapter ju...

ORGANISM(S): Homo sapiens

2014-08-26 | E-GEOD-49546 | biostudies-arrayexpress

Expression QTL mapping of Toxoplasma gondii genes

This SuperSeries is composed of the following subset Series: GSE11437: Expression QTL mapping of Toxoplasma gondii genes, Bradyzoite array GSE11514: Expression QTL mapping of Toxoplasma gondii genes, Tachyzoite array Keywords: SuperSeries Refer to individual Series

ORGANISM(S): synthetic construct

2008-05-22 | E-GEOD-11515 | biostudies-arrayexpress

Expression QTL mapping of Toxoplasma gondii genes, Bradyzoite array

Toxoplasma gondii is an intracellular parasite with a significant impact on human health, especially in cases where individuals are immunocompromised (e.g., due to HIV/AIDS). In Europe and North America only a few clonal genotypes appear to be responsible for the vast majority of Toxoplasma infecti...

ORGANISM(S): synthetic construct

2008-05-22 | E-GEOD-11437 | biostudies-arrayexpress

Expression QTL mapping of Toxoplasma gondii genes, Tachyzoite array

ORGANISM(S): Toxoplasma gondii

2008-05-22 | E-GEOD-11514 | biostudies-arrayexpress

eQTL mapping in Lake Whitefish Species Pairs.

Mapping of expression quantitative trait loci (eQTL) is a powerful means for elucidating the genetic architecture of gene regulation. Yet, eQTL mapping has not been applied towards investigating the regulation architecture of genes involved in the process of population divergence, ultimately leading...

ORGANISM(S): Coregonus clupeaformis

2008-09-01 | E-GEOD-11378 | biostudies-arrayexpress

Microarray-based global mapping of integration sites of retrotransposon, intracisternal A-particle, in mouse genome

Mammalian genomes have evolutionary harbored numerous mobile elements, a part of which are still active and evoke genomic instability. Their movement and positional diversity occasionally result in phenotypic changes and variation by causing altered expression and disruption of neighboring genes in...

ORGANISM(S): Mus musculus

2008-05-03 | E-GEOD-9572 | biostudies-arrayexpress

Previous page
1 / 693
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 693
Next page

Sort by:

Relevance

Page size

6921 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Classification

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets