van der Mark S S

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Unknown (131)
Transcriptomics (31)
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Homo sapiens (40)
Mus musculus (12)
Streptococcus pneumoniae (4)
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Repository

biostudies-arrayexpress (39)
EGA (21)
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pride (3)
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Tissue

Cell culture (2)
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Disease

Chronic granulomatous disease (1)
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Technology Type

Mass spectrometry (6)
Mass Spectrometry (3)
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Affymetrix OncoScan FFPE Express (1)
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Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)
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Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)

Publication Date

2010 (7)
2006 (6)
2015 (5)
2014 (4)
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2019 (3)
2012 (3)
2011 (3)
2008 (3)
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2007 (2)
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2013 (1)
2009 (1)
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CHEBI ID

CHEBI:10072 (1)
CHEBI:131440 (1)
CHEBI:132744 (1)
CHEBI:132785 (1)
CHEBI:145223 (1)
CHEBI:15318 (1)
CHEBI:156419 (1)
CHEBI:156470 (1)
CHEBI:15724 (1)
CHEBI:157671 (1)
CHEBI:157672 (1)
CHEBI:16020 (1)
CHEBI:16040 (1)
CHEBI:16411 (1)
CHEBI:16449 (1)
CHEBI:16704 (1)
CHEBI:16737 (1)
CHEBI:16814 (1)
CHEBI:16914 (1)
CHEBI:16919 (1)
CHEBI:17012 (1)
CHEBI:17311 (1)
CHEBI:17368 (1)
CHEBI:17405 (1)
CHEBI:17509 (1)
CHEBI:17626 (1)
CHEBI:176458 (1)
CHEBI:17724 (1)
CHEBI:17768 (1)
CHEBI:17775 (1)

Metabolite Name

(S)-3-Hydroxytetradecanoyl-CoA (1)
(S)-Menthone 8-thioacetate (1)
1,1-Dimethylbiguanide (Metformin) (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
2,4-Dihydroxylamino-6-nitrotoluene (1)
3-Hydroxy-L-proline (1)
3-methylhistidine (1)
4-Fluorocatechol (1)
4-Oxoproline (1)
4-Trimethylammoniobutanoate (1)
6-Imino-5-oxocyclohexa-1,3-dienecarboxylate (1)
7-Methylguanine (1)
7-Methylxanthosine (1)
AN11736 (1)
Acetylpyruvate (1)
Aconitic acid (1)
Alanine (1)
Aminomuconic acid (1)
Asymmetric Dimethylarginine (1)
Betalamic acid (1)
Butyrylcarnitine (1)
CE 18:0 (1)
CL(1'-[18:2(9Z,12Z)/0:0],3'-[18:2(9Z,12Z)/0:0]) (1)
Cer 34:0;2O (1)
Cer 34:1;2O|Cer 18:1;2O/16:0 (1)
Cer 36:1;2O (1)
Cer 38:0;3O (1)
Cer 40:0;2O|Cer 18:0;2O/22:0 (1)
Cer 40:1;2O|Cer 18:1;2O/22:0 (1)
Cer 40:2;2O|Cer 18:1;2O/22:1 (1)

Study type

Transcription profiling by array (20)
ChIP-seq (5)
Comparative genomic hybridization by array (3)
RNA-seq of coding RNA (3)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (20)
2024 (19)
2020 (17)
2022 (14)
2021 (14)
2019 (13)
2023 (11)
2014 (8)
2010 (7)
2015 (6)
2006 (6)
2018 (6)
2017 (6)
2016 (6)
2012 (4)
2008 (4)
2011 (3)
2026 (2)
2007 (2)
2013 (1)
2009 (1)

Lab affiliation

Associate Professor Dept. of Pathology and Laboratory Medicine HSRF 218, University of Vermont Larner College of Medicine Burlington, Vermont, 05405, USA (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
Research Center One Health Ruhr, University Alliance Ruhr & University Hospital Essen, Medical Faculty, University Duisburg-Essen (1)

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Comparative genomic hybridization by array of Streptococcus pneumoniae isolates from the Mitis group to identify pneumococcal virulance genes

Data is also available from BuG@Sbase

ORGANISM(S): Streptococcus pneumoniae

2010-07-22 | E-BUGS-82 | biostudies-arrayexpress

Disruption of ADNP-KDM1A-GTF2I complex drives neural differentiation imbalance in Helsmoortel-Van der Aa syndrome [ ChIP-seq ]

This work attempt at characterizing the DNA binding activity of ADNP in healthy lines, HVDAS lines, and ADNP KO lines. We profiled also the epigenomic landscape of the same lines, to reconstruct the molecular basis of HVDAS at early stages of neurodevelopment. We performed ChIP-seq of active enhance...

ORGANISM(S): Homo sapiens

2026-01-26 | E-MTAB-16527 | biostudies-arrayexpress

Linking the Morphology of Sternal Glands to Rubbing Behavior by Vespa soror (Hymenoptera: Vespidae) Workers During Recruitment for Group Predation.

Not available

S-EPMC8921610 | biostudies-literature

Genome wide maps of histone demethylase jmjd3, chromatin state and RNA pol in mouse bone marrow-derived macrophages

Inflammatory responses triggered by either microbial or endogenous stimuli rely on a complex transcriptional program that involves the differential expression of hundreds of genes. Jmjd3, a JmjC family histone demethylase (HDM), is quickly induced by the transcription factor NF-kB in response to inf...

ORGANISM(S): Mus musculus

2009-11-23 | E-GEOD-17631 | biostudies-arrayexpress

Transcription profiling of Bos taurus mucosal derived ab and gd T cells during Salmonella enterica serovar typhimurium enterocolitis

gd T cells have an important yet incompletely defined role in inflammation associated with a variety of infectious and autoimmune conditions. To better understand the precise roles of gd T cells relative to ab T cells in a specific infection, we utilized Salmonella Enterica Serovar Typhimurium (S. ...

ORGANISM(S): Bos taurus

2008-11-08 | E-GEOD-3439 | biostudies-arrayexpress

Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs.

Not available

S-EPMC6156977 | biostudies-literature

Transcription profiling of by array of Streptococcus pneumoniae D39 to investigate the effect of manganese limitation

Data is also available from BuG@Sbase

ORGANISM(S): Streptococcus pneumoniae

2010-07-22 | E-BUGS-89 | biostudies-arrayexpress

Virtual-reality cognitive behavior therapy versus cognitive behavior therapy for paranoid ideation: A pragmatic, single-blind, multicenter randomized clinical superiority trial.

Not available

S-EPMC12270272 | biostudies-literature