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UnknownIn-depth method assessments of differentially expressed protein detection for shotgun proteomics data with missing values.
Not available
S-EPMC5469784 | biostudies-literature
ProteomicsProteome differences between sporulated oocysts of ToxoDB#9 and Type II Toxoplasma gondii
Understanding of protein expression difference in the same stage of T.gondii among different genotypes will facilitate the elucidation of genotypic divergence among the T.gondii strains. A 4-plex iTRAQ (isobaric tag for relative and absolute quantitation) based LC-MS/MS approach was employed to surv...
ORGANISM(S): Toxoplasma gondii 
2018-10-26 | PXD005928 | Pride
Itraq  differentially expressed protein (dep) Oxoplasma gondii  sporulated oocyst  genotype 
UnknownMass spectrometric identification of in vivo phosphorylation sites of differentially expressed proteins in elongating cotton fiber cells.
Not available
S-EPMC3596310 | biostudies-literature
ProteomicsProteomic analysis of seed germination of wheat (Triticum aestivum L.)
In this study, we performed the first dynamic proteome analysis of wheat seed germination using a two-dimensional differential gel electrophoresis (2D-DIGE)-based proteomic approach. A total of 166 differentially expressed protein (DEP) spots representing 73 unique proteins were identified.
ORGANISM(S): Triticum aestivum (Wheat) 
2015-12-09 | PXD003083 | Pride
2d-dige  proteome. Bread wheat Seed germination 
TranscriptomicsGene expression profiling of xenografts and mouse embryonic fibroblasts with ectopically expressed PREX2 mutants
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Mus musculus 
2016-04-06 | E-GEOD-57311 | biostudies-arrayexpress
TranscriptomicsRegulation of HB-EGF by miR-212 and acquired cetuximab-resistance in head and neck cancer
To determine the mechanism of cetuximab-resistance in head and neck cancer, a cetuximab-sensitive cell line (SCC1) and its cetuximab-resistant derivative (1Cc8) were analyzed for differentially expressed genes using DNA microarrays. 900 differentially expressed genes were found using the statistical...
ORGANISM(S): Homo sapiens 
2011-01-14 | E-GEOD-21483 | biostudies-arrayexpress
ProteomicsMyocardial Injury Caused by Chronic Alcohol Exposure——A Pilot Study Based on Proteomic
Chronic alcohol exposure can cause myocardial degenerative diseases, manifested as cardiac insufficiency, arrhythmia, etc. These are defined as alcoholic cardiomyopathy (ACM). Alcohol-mediated myocardial injury has previously been studied through metabolomics, and it has been proved to be involved i...
ORGANISM(S): Mus musculus (Mouse) 
2022-08-12 | PXD032949 | Pride
Alcoholic cardiomyopathy  proteomics  differentially expressed proteins  kegg pathway  myocardial injury 
TranscriptomicsTranscription profiling of mouse inflammatory response to titanium dioxide particles exposure is enhanced during pregnancy
Rationale: Maternal immune responses can promote allergy development in offspring. Pilot data show that neonates of mother mice exposed during pregnancy to air pollution particles have increased allergic susceptibility. Objective: We investigated whether inflammatory response to titanium dioxide (Ti...
ORGANISM(S): Mus musculus 
2008-06-15 | E-GEOD-7475 | biostudies-arrayexpress
TranscriptomicsExpression data from Suv420h1 knockout and mutant PREX2 expressing MEFs (mouse embryonic fibroblasts)
PREX2 truncating mutations occur in melanoma. We used microarray based gene expression profiling to compare expression patterns between cells harboring Suv420h1 knockout and PREX2 mutant expressing Spontaneously immortalized MEFs from either wt or Suv420h1 knockout mice were used. Wt MEFs were trans...
ORGANISM(S): Mus musculus 
2016-04-06 | E-GEOD-57310 | biostudies-arrayexpress
Proteomicsrat myocardial left ventricular tissue proteins LC-MSMS
Rat left ventricular tissue LC-MSMS.Rat left ventricular tissue proteins from different groups were extracted and quantified using the BCA Protein Assay Kit (Thermo Fisher Scientific, USA). The proteins were then labeled with tandem mass tags (TMT). TMT6/10 (Pierce, USA) with different reporter ions...
ORGANISM(S): Rattus norvegicus (Rat) 
2021-07-26 | PXD024641 | Pride
Rat Heart Lc-msms 
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