hplc-ms. - OmicsDI

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Proteomics (7542)
Unknown (4257)
Metabolomics (822)
Genomics (77)
Transcriptomics (43)
Other (24)
Methylation profiling (5)
Multiomics (2)
Clinical (1)

Organisms

Homo sapiens (97)
Mus musculus (38)
Arabidopsis thaliana (14)
Bos taurus (5)
Rattus norvegicus (5)
Staphylococcus aureus (5)
Escherichia coli (5)
Vitis vinifera (2)
Hordeum vulgare (2)
Oryctolagus cuniculus (2)
standard reference vector pMCS (2)
Brittonodoxa subpinnata (2)
Theobroma cacao (2)
Aeromonas hydrophila subsp. hydrophila ATCC 7966 (2)
Rattus rattus (2)
Zymomonas mobilis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Burkholderia cenocepacia (1)
Streptomyces seoulensis (1)
Ruminiclostridium cellobioparum subsp. termitidis CT1112 (1)
Capsicum annuum (1)
Oryza sativa (1)
Caenorhabditis elegans (1)
Ctenopharyngodon idella (1)
Ribes nigrum (1)
Euphorbia dendroides (1)
Eudistoma vannamei (1)
Nicotiana attenuata (1)
Streptomyces sp. (1)
Leptopilina (1)

Organisms

Homo sapiens (16)
Sanghuangporus sanghuang (7)
Mus musculus (5)
Pericallis cruenta (1)
Ruminiclostridium cellobioparum subsp. termitidis CT1112 (1)
Streptomyces seoulensis (1)
Lysinibacillus (1)
Pseudogymnoascus australis (1)
Hordeum vulgare (1)
Polygonatum kingianum (1)
Streptomyces (1)
Capsicum annuum (1)
Caenorhabditis elegans (1)
Oryza sativa (1)
human gut metagenome (1)
Vitis vinifera (1)
Bacillus velezensis (1)
mouse gut metagenome (1)
Rattus norvegicus (1)
sediment metagenome (1)

Repository

pride (7054)
MetaboLights (755)
MassIVE (349)
ENA (70)
iProX (67)
GNPS (62)
jPOST (60)
biostudies-arrayexpress (31)
geo (26)
PanoramaPublic (26)
PAXDB (6)
NODE (5)
EGA (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (1549)
Epithelial cell (433)
Brain (368)
Permanent cell line cell (260)
Liver (223)
Blood plasma (185)
Blood (174)
Plant cell (150)
Leaf (136)
Fibroblast (134)
Whole body (132)
Kidney (124)
Lung (122)
Cell suspension culture (120)
Heart (107)
T cell (104)
Blood cell (97)
Blood serum (91)
Skin (88)
Colon (80)
Macrophage (77)
Bone marrow (74)
Hepatocyte (73)
Primary cell (72)
Testis (71)
B cell (68)
Leaf (2)
Root (2)
Blood (1)
Cell line (1)

Disease

Disease free (190)
Breast cancer (152)
Colon cancer (127)
Acute leukemia (73)
Alzheimer's disease (52)
Malignant neoplasm of ovary (40)
Cervix carcinoma (39)
Cardiovascular system disease (34)
Type 2 diabetes mellitus (34)
COVID-19 (31)
Melanoma (29)
Wounds and Injuries (29)
Plasmodium falciparum malaria (26)
Brain cancer (26)
Parkinson's disease (25)
Lung cancer (24)
Hepatocellular carcinoma (22)
Lymphoma (22)
Prostate adenocarcinoma (21)
Influenza (19)
Obesity (18)
Multiple myeloma (18)
Pancreatic cancer (18)
Glioblastoma (18)
Non-small cell lung carcinoma (17)
Osteosarcoma (16)
Amyotrophic lateral sclerosis (15)
Reference (1)
Peritoneal Metastases (1)
Diabetes (1)

Technology Type

Mass Spectrometry (7055)
Shotgun proteomics (3934)
Bottom-up proteomics (1283)
Affinity purification coupled with mass spectrometry proteomics (769)
Data-dependent acquisition (747)
Mass spectrometry (554)
Gel-based experiment (463)
Data-independent acquisition (368)
Top-down proteomics (248)
SWATH MS (241)
Chemical cross-linking coupled with mass spectrometry proteomics (205)
Mass spectrometry assay (195)
SRM/MRM (113)
All-ion fragmentation (36)
DiaPASEF (31)
Mass spectrometry imaging (24)
MSE (22)
Affinity proteomics (21)
NMR spectroscopy (15)
HDMSE (14)
Metaproteomics (10)
Proteogenomics (10)
Immunopeptidomics (10)
Glycoproteomics (6)
ESI (1)
RNA mass spectrometry (1)

Instrument Platform

Q Exactive (55)
Exactive (Thermo Scientific) (24)
Q Exactive HF (23)
MaXis (13)
Impact (11)
LTQ Orbitrap XL (11)
LTQ Orbitrap (8)
TimsTOF fleX (6)
6520A Quadrupole Time-of-Flight LC/MS (5)
Impact II (5)
Xevo G2-XS QTof (4)
Amazon SL (Bruker Daltonics amaZon series) (4)
6550 iFunnel Q-TOF LC/MS (3)
6490 Triple Quadrupole LC/MS (Agilent) (3)
Shimadzu Scientific Instruments instrument model|1000603 (2)
Agilent software|1000689 (2)
6470 Triple Quadrupole LC/MS (Agilent instrument model) (2)
HPLC-MS ESI low resolution (Thermo-Fischer) (2)
6495C Triple Quadrupole LC/MS (2)
ACQUITY UPLC I-Class (2)
Illumina HiSeq X (1)
Illumina NovaSeq 6000 (1)
Agilent 1290 Infinity II HPLC system coupled to a qTOF 6550 ESI\/MS (1)
Agilent 1290 Infinity II LC System (Agilent Technologies) coupled with a qTOF 6550 mass detector (1)
Xevo G2 XS Tof|1002729 (1)
SCIEX software|1000690 (1)
AmaZon SL (Bruker Daltonics amaZon series) (1)
LTQ Orbitrap|1000449 (1)
ESI-qQTOF Impact II (1)
MicrOTOF-Q (1)

Publication Date

2025 (1116)
2022 (999)
2024 (982)
2023 (969)
2026 (953)
2021 (841)
2020 (657)
2019 (554)
2018 (441)
2017 (308)
2016 (248)
2015 (167)
2014 (80)
2013 (23)
2012 (6)
2011 (4)
2010 (4)
2005 (4)
2027 (4)
2006 (3)
2009 (2)
2007 (2)
2004 (2)
2008 (1)

UNIPROT ID/AC

A1KYB0_TOBAC (3)
A0A1S3ZDG6_TOBAC (3)
A0A1S4CC76_TOBAC (3)
I7GVS5_TOBAC (3)
A0A1S3ZKW0_TOBAC (3)
METK1_TOBAC (3)
FRI1_TOBAC (3)
A0A140G1S2_TOBAC (3)
A0A1S4ARB9_TOBAC (3)
A0A1S3ZJA2_TOBAC (3)
A0A1S4CHM7_TOBAC (3)
A0A1S3Y5T4_TOBAC (3)
A0A1S4A1J2_TOBAC (3)
Q6Q8A6_TOBAC (3)
PMGI_TOBAC (3)
A0A1S3XU77_TOBAC (3)
A0A1S3XE25_TOBAC (3)
A0A1S4BMU1_TOBAC (3)
A0A1S4B543_TOBAC (3)
A0A1S3Z2K5_TOBAC (3)
A0A1S3Z744_TOBAC (3)
PDC2_TOBAC (3)
A0A140G1P7_TOBAC (3)
Q75ZD8_TOBAC (3)
A0A1S4C7C1_TOBAC (3)
Q1G0Z1_TOBAC (3)
A0A1S3YNC4_TOBAC (3)
IF411_TOBAC (3)
A0A1S4DBQ6_TOBAC (3)
A0A1S3XHC2_TOBAC (3)

CHEBI ID

CHEBI:16335 (154)
CHEBI:30769 (149)
CHEBI:17368 (147)
CHEBI:15891 (143)
CHEBI:16704 (140)
CHEBI:16708 (128)
CHEBI:28044 (126)
CHEBI:17596 (125)
CHEBI:27897 (124)
CHEBI:15741 (122)
CHEBI:16919 (122)
CHEBI:16811 (117)
CHEBI:7916 (117)
CHEBI:17562 (115)
CHEBI:17568 (115)
CHEBI:18186 (114)
CHEBI:18257 (114)
CHEBI:16750 (113)
CHEBI:15428 (113)
CHEBI:17154 (113)
CHEBI:17750 (113)
CHEBI:16737 (113)
CHEBI:28300 (111)
CHEBI:16027 (111)
CHEBI:26271 (110)
CHEBI:25017 (110)
CHEBI:29016 (110)
CHEBI:30915 (109)
CHEBI:17822 (106)
CHEBI:6650 (106)

Metabolite Name

Hypoxanthine (124)
Uridine (112)
Taurine (110)
Adenosine (109)
Creatine (107)
Inosine (102)
Adenine (101)
Creatinine (98)
Uracil (97)
Cytidine (89)
Xanthine (85)
L-Phenylalanine (85)
L-Tryptophan (83)
Ornithine (82)
Guanosine (82)
L-Tyrosine (78)
L-Histidine (77)
Citric acid (77)
Betaine (76)
Phenylalanine (73)
L-Proline (72)
Choline (72)
Methionine (71)
Guanine (70)
Citrulline (69)
L-Arginine (69)
L-Glutamine (68)
Xanthosine (67)
Glutamine (67)
Tyrosine (66)

First Public Date

2025 (11)
2021 (11)
2019 (9)
2024 (8)
2026 (7)
2020 (5)
2023 (4)
2016 (4)
2014 (4)
2018 (3)
2022 (2)
2015 (1)
2013 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (21)
4x(15)N labeled L-arginine (18)
2x(15)N labeled L-lysine (15)
15.994915 (14)
57.021464 (11)
42.010565 (10)
N6 (10)
N6-dimethyl-L-lysine (9)
-17.026549 (8)
Not available (6)
79.966331 (5)
45.029395 (4)
-18.010565 (3)
58.005479 (3)
+3amu) (3)
56.026215 (2)
10.008269 (2)
4x(2)H labeled dimethylated residue (2)
6x(2)H labeled dimethylated L-arginine (2)
32.056407 (1)
59.036279 (1)
0.984016 (1)
4-dinitrophenyl modified residue (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
71.037114 (1)
4x(2)H labeled dimethylated L-lysine (1)
4 (1)

Study status

Not yet recruiting (1)

Study type

Transcription profiling by array (23)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
Interventional (1)

Release Date

2022 (582)
2023 (499)
2021 (446)
2025 (440)
2020 (403)
2024 (366)
2019 (314)
2018 (274)
2017 (171)
2015 (130)
2016 (120)
2014 (107)
2013 (88)
2026 (67)
2012 (65)
2011 (60)
2010 (45)
2009 (26)
2008 (25)
2007 (24)
2005 (11)
2006 (10)
2004 (5)
2003 (4)
2000 (2)
2002 (1)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (68)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (31)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (22)
University of Edinburgh (22)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (21)
Functional Proteomics, ICR (19)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (17)
University of Oxford (15)
The Institute of Cancer Research (14)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (12)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (11)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (11)
Associate Member, St. Jude Faculty Developmental Neurobiology St. Jude Children's Research Hospital Memphis, TN-38105 (10)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (10)
NCI/NIH CSB (10)
St Jude Children's Research Hospital (10)
The University of Melbourne (10)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (9)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (9)
Brigham and Women's Hospital, Harvard Medical School (9)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (9)
Harvard Medical School (9)
Massachusetts Institute of Technology (9)
Institute of Cancer Research, London (8)
Biozentrum, University of Basel, Switzerland (8)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (8)
University of Warwick (8)
Institute of Molecular Biology (IMB) (8)
Wellcome Trust Sanger Institute (8)

Location

Australia (1)

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HPLC-MS/MS analysis of proteins in serum samples

HPLC-MS/MS analysis of proteins in serum samples using high-resolution mass spectrometry. Dataset of 50 samples from patients with schizophrenia (Series "SCH") and 50 samples from healthy volunteers (Series "CNT") and the data analysis were carried out using shotgun ultra-high resolution mass spectr...

ORGANISM(S): Homo sapiens (Human)

2019-12-04 | PXD016297 | Pride

HPLC-MS datasets of the protein mix immunoprecipitated by SIRT7 antibody in HaCaT cells

We conducted HPLC-MS analysis of the protein mix immunoprecipitated by SIRT7 antibody under non-IR and 8 Gy X-ray irradiation to identify the interacting proteins of SIRT7 in HaCaT cells.

ORGANISM(S): Homo sapiens (Human)

2023-03-10 | PXD033924 | Pride

Human Hplc-ms Sirt7

Identification of unusual phospholipids from bovine heart mitochondria by HPLC-MS/MS.

Not available

S-EPMC7707168 | biostudies-literature

Phase II Metabolism of Asarone Isomers In Vitro and in Humans Using HPLC-MS/MS and HPLC-qToF/MS.

Not available

S-EPMC8467817 | biostudies-literature

HPLC-MS datasets of LINP1 RNA pulldown samples in A431 cells

We performed LINP1 RNA pulldown followed by HPLC-MS analysis to identify LINP1-interacting proteins in A431 cells. With high performance liquid chromatography-mass spectrometry (HPLC-MS), the binding protein of LINP1 from RNA pull down was detected by removing non-specific protein which were binding...

ORGANISM(S): Homo sapiens (Human)

2023-05-10 | PXD032027 | Pride

Human a431 cells hplc-ms

Green Extraction of Alkaloids and Polyphenols from Peumus boldus Leaves with Natural Deep Eutectic Solvents and Profiling by HPLC-PDA-IT-MS/MS and HPLC-QTOF-MS/MS.

Not available

S-EPMC7076633 | biostudies-literature

Improving global feature detectabilities through scan range splitting for untargeted metabolomics by high-performance liquid chromatography-Orbitrap mass spectrometry

Untargeted metabolomics aims at obtaining quantitative information on the highest possible number of low-molecular biomolecules present in a biological sample. Rather small changes in mass spectrometric spectrum acquisition parameters may have a significant influence on the detectabilities of metabo...

2016-06-09 | MTBLS233 | MetaboLights

Semisynthesis of Stable Isotope-Labeled Ergot Alkaloids for HPLC-MS/MS Analysis.

Not available

S-EPMC12291449 | biostudies-literature

Qualitative and Quantitative Analysis of Lignan Constituents in Caulis Trachelospermi by HPLC-QTOF-MS and HPLC-UV.

Not available

S-EPMC6272670 | biostudies-literature

Rapid Characterization of Triterpene Saponins from Zornia brasiliensis by HPLC-ESI-MS/MS.

Not available

S-EPMC6680687 | biostudies-literature

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