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MetabolomicsIntegrated proteome and lipidome analyses place OCIAD1 at mitochondria-peroxisome intersection balancing lipid metabolism

OCIAD1 (Ovarian Cancer Immunoreactive Antigen Domain Containing 1) is a membrane protein largely localized to mitochondria, however, its function in health or disease is not well understood. To comprehensively characterize the molecular changes upon lack of OCIAD1, we used mass spectrometry to st...

2025-04-25 | MTBLS12329 | MetaboLights
UnknownComparative Evaluation of MaxQuant and Proteome Discoverer MS1-Based Protein Quantification Tools.
Not available
S-EPMC8280745 | biostudies-literature
UnknownAnalysis of PNGase F-Resistant N-Glycopeptides Using SugarQb for Proteome Discoverer 2.1 Reveals Cryptic Substrate Specificities.
Not available
S-EPMC6055662 | biostudies-literature
ProteomicsComparative Evaluation of MaxQuant and Proteome Discoverer MS1-based Protein Quantification Tools
MS1-based label-free quantification can compare precursor ion peaks across runs, allowing reproducible protein measurements. Among bioinformatic platforms enabling MS1-based quantification, MaxQuant (MQ) is one of the most used, while Proteome Discoverer (PD) has recently introduced the Minora tool....
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2021-05-31 | PXD022169 | Pride
Dynamic range Proteomics Mass spectrometry Specificity Sensitivity Accuracy Precision Label-free quantification Differential analysis 
UnknownProteome data of Anopheles stephensi hemolymph using high resolution mass spectrometry.
Not available
S-EPMC5997892 | biostudies-literature
UnknownProteome Profiling of Rat Brain Cortical Changes during Early Postnatal Brain Development.
Not available
S-EPMC10851773 | biostudies-literature
ProteomicsMS Annika: A new Cross-Linking Search Engine
A cross linking mass spectrometry search engine was developed and implemented into Thermo Proteome Discoverer. The search engine is capable to handle several linker types as well as data input formats. To demonstrate its ability processing Bruker -ion mobility data, synthetic peptides (Beveridge, et...
ORGANISM(S): Streptococcus pyogenes ABC020006030 
2021-05-27 | PXD022772 | Pride
Xl-ms Proteome-discoverer Ion-mobility Search-engine 
UnknownSpectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins.
Not available
S-EPMC6456873 | biostudies-literature
ProteomicsReanalysis of Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism in Proteome Discoverer 2.5
This is a reanalysis of PXD017419 performed in Proteome Discoverer version 2.5
ORGANISM(S): Danio Rerio (ncbitaxon:7955) 
2021-12-06 | MSV000088522 | MassIVE
ProteomicsErastin and ferrostatin induced protein expression change in HepG2 cells
Project description: HepG2 cells were treated with DMSO, erastin and ferrostatin, respectively. Protein was extracted and separated using SDS-PAGE electrophoresis. MS analysis was performed and protein was identified and quantified using Proteome Discoverer™ 1.3 software using the SEQUEST® search en...
ORGANISM(S): Homo sapiens (Human) 
2019-11-12 | PXD010761 | Pride
Erastin Ferroptosis Liver cancer 
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