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ProteomicsGlobal proteomic profiling of multiple organs of cat (Felis catus) and proteome-transcriptome correlation during acute Toxoplasma gondii infection
Understanding altered expression of proteins and transcripts associated with Toxoplasma gondii infection in cats may improve our understanding of how this parasite manipulates the molecular microenvironment of the definitive host. We performed proteomics analysis of six organs (brain, heart, spleen,...
ORGANISM(S): Felis catus (Cat) (Felis silvestris catus) 
2022-10-15 | PXD033778 | Pride
Toxoplasma gondii Toxoplasmosis Cat Correlation Proteomic profiling 
ProteomicsCsde1 binds transcripts involved in protein homeostasis and controls their expression in erythropoiesis
The RNA binding protein Csde1 (Cold shock domain protein e1) is strongly upregulated during erythropoiesis, but its expression is reduced in Diamond Blackfan Anemia (DBA). To understand the role of Csde1 in DBA, and the cellular pathways controlled by Csde1 in erythropoiesis, we identified the trans...
ORGANISM(S): Mus musculus (Mouse) 
2018-10-24 | PXD006358 | Pride
Proteomics Csde1 Label-free qauntification Ibaq Rna-binding protein Erythropoiesis Translation 
TranscriptomicsQuantitative time-course profiling of Plasmodium falciparum transcripts and proteins throughout the 48-hour intraerythrocytic developmental cycle
Quantitative studies of the P. falciparum transcriptome have shown that the tightly controlled progression of the parasite through the intraerythrocytic developmental cycle (IDC) is accompanied by a continuous gene expression cascade where most expressed genes exhibit a single transcriptional peak. ...
ORGANISM(S): Plasmodium falciparum 
2011-06-07 | E-GEOD-24416 | biostudies-arrayexpress
ProteomicsComprehensive analysis of transcripts and proteins relative abundance during Plasmodium falciparum blood stages
We aimed to evaluate the relevance of mRNA study as a proxy of protein expression in sequestered parasites. To do so, we conducted a proteotranscriptomic analysis using five independent P. falciparum laboratory strains samples. RNA sequencing was performed on circulating ring stage parasites and LC-...
ORGANISM(S): Plasmodium falciparum 
2021-02-10 | PXD020052 | Pride
Plasmodium falciparum  rna-seq  fpkm  lc-ms/ms  label free quantification  transcriptomes  proteomes  transcripts and proteins expression correlation 
GenomicsComprehensive analysis of transcripts and proteins relative abundance during Plasmodium falciparum blood stages
Comprehensive analysis of transcripts and proteins relative abundance during Plasmodium falciparum blood stages
PRJNA639823 | ENA
TranscriptomicsCordycepin time course: Identification of unstable transcripts
mRNA degradation provides a powerful means for controlling gene expression during growth, development, and many physiological transitions in plants and other systems. Rates of decay help define the steady state levels to which transcripts accumulate in the cytoplasm and determine the speed with whic...
ORGANISM(S): Arabidopsis thaliana 
2005-09-09 | E-GEOD-3270 | biostudies-arrayexpress
TranscriptomicsQuantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells
Early rapid changes in response to the phytohormone abscisic acid (ABA) have been observed at the transcript level, but little is known how these transcript changes translate to changes in protein abundance under the same conditions. Here we have performed a global quantitative analysis of transcrip...
ORGANISM(S): Arabidopsis thaliana 
2011-04-07 | E-GEOD-23301 | biostudies-arrayexpress
TranscriptomicsExtensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
This SuperSeries is composed of the following subset Series: GSE3968: Puf proteins, RNA co-immunopurification GSE3969: Puf3delta vs. wild type comparison Abstract: Genes encoding RNA-binding proteins are diverse and abundant in eukaryotic genomes. Although some have been shown to have roles in post...
ORGANISM(S): Saccharomyces cerevisiae 
2006-03-07 | E-GEOD-4393 | biostudies-arrayexpress
TranscriptomicsResponse of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source.
The global gene expression program that accompanies the adaptation of Saccharomyces cerevisiae to an abrupt transfer from a fermentable to a nonfermentable carbon source was characterized by using a cDNA microarray to monitor the relative abundances and polysomal distributions of mRNAs. Features of ...
ORGANISM(S): Saccharomyces cerevisiae 
2005-08-25 | E-GEOD-3190 | biostudies-arrayexpress
TranscriptomicsPuf proteins, RNA co-immunopurification
RNA-coimmunopurifications with TAP-tagged Puf proteins from Saccharomyces cereviseae. Untagged strain (BY4741) served as a control. Cells were grown to midlog phase and harvested by centrifugation. TAP-tagged Puf proteins were affinity purified from cell-free extracts with IgG sepharose and eluted ...
ORGANISM(S): Saccharomyces cerevisiae 
2006-01-03 | E-GEOD-3968 | biostudies-arrayexpress
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