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TranscriptomicsCompression Xylem vs. Opposite Xylem
This SuperSeries is composed of the following subset Series: GSE37678: cDNA Microarray 1: Compression Xylem vs. Opposite Xylem GSE37736: cDNA Microarray 2: Compression Xylem vs. Opposite Xylem Refer to individual Series
ORGANISM(S): Pinus pinaster 
2012-05-05 | E-GEOD-37789 | biostudies-arrayexpress
TranscriptomicscDNA Microarray 2: Compression Xylem vs. Opposite Xylem
The within-tree variation in wood properties constitutes an exceptional model to study the mechanisms that adjust the different biosynthetic pathways providing substrates with the massive and variable demands of different biosynthetic reactions of cell wall polymers. Although a few genes have been r...
ORGANISM(S): Pinus pinaster 
2012-05-05 | E-GEOD-37736 | biostudies-arrayexpress
TranscriptomicscDNA Microarray 1: Compression Xylem vs. Opposite Xylem
The within-tree variation in wood properties constitutes an exceptional model to study the mechanisms that adjust the different biosynthetic pathways providing substrates with the massive and variable demands of different biosynthetic reactions of cell wall polymers. Although a few genes have been r...
ORGANISM(S): Pinus pinaster 
2012-05-05 | E-GEOD-37678 | biostudies-arrayexpress
ProteomicsA causal model of ion interference enables assessment and correction of ratio compression in multiplex proteomics
We thoroughly characterize isobaric labeling (TMT)-associated reporter ion interference at the MS2 level using a defined two-proteome experimental system with known ground truth. We discover remarkably poor agreement between the apparent precursor purity in the isolation window and the actual level ...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae Saccharomyces cerevisiae (Baker's yeast) 
2023-12-19 | PXD040449 | Pride
Ion interference Tmt Ratio compression Isobaric label 
ProteomicsAird: A computation-oriented mass spectrometry data format enables a higher compression ratio and less decoding time
We describe "Aird", an opensource and computation-oriented format with controllable precision, flexible indexing strategies, and high compression rate. Aird provides a novel compressor called Zlib-Diff-PforDelta (ZDPD) for m/z data. Compared with Zlib only, m/z data size is about 55% lower in Aird o...
ORGANISM(S): Homo Sapiens 
PXD025310 |
ProteomicsAird: A computation-oriented mass spectrometry data format enables a higher compression ratio and less decoding time
We describe "Aird", an opensource and computation-oriented format with controllable precision, flexible indexing strategies, and high compression rate. Aird provides a novel compressor called Zlib-Diff-PforDelta (ZDPD) for m/z data. Compared with Zlib only, m/z data size is about 55% lower in Aird o...
ORGANISM(S): Homo sapiens (Human) 
2021-04-12 | PXD025142 | Pride
Metabolomics Dia Prm Aird Compressor Proteomics Dda 
ProteomicsExtensive Peptide Fractionation and y1 Ion-based Interference Detection Enable Accurate Quantification by Isobaric Labeling and Mass Spectrometry
Isobaric labeling quantification by mass spectrometry (MS) has emerged as a powerful technology for multiplexed large-scale protein profiling, but measurement accuracy in complex mixtures is confounded by the interference from co-isolated ions, resulting in ratio compression. Here we report that the...
ORGANISM(S): Escherichia coli 
2022-02-28 | PXD005797 | Pride
Isobaric labeling Proteomics Tmt Mass spectrometry And ratio compression Itraq Lc-ms/ms 
ProteomicsON THE ACCURACY, PRECISION AND STATISTICAL SIGNIFICANCE OF COMPRESSED RATIOS IN ISOBARIC LABELLING
Despite the outstanding advantages that isobaric labelling has to offer in quantitative proteomics, its precision and accuracy are undermined by ratio compression, which is consequence of the co-isolation of peptides within a selected isolation window. Here, using the two-proteomes approach we inves...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2016-08-08 | PXD003640 | Pride
Isobaric labelling Statistics Accuracy Ratio compression Precision 
TranscriptomicsTranscriptome profiling of Pinus radiata branches reveals new insights into compression wood formation in response to gravity stress
Compression (CW) and opposite wood (OW) are formed in the uniderside and upperside of conifer branches respectively in response to gravity stress. We investigated genes differentially transcribed between the underside and upside of radiate pine branches using cDNA microarrays with a view to plant gr...
ORGANISM(S): Pinus radiata 
2014-05-30 | E-GEOD-47167 | biostudies-arrayexpress
UnknownzDUR: reference-free FASTQ compressor with high compression ratio and speed.
Not available
S-EPMC12911337 | biostudies-literature
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