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ProteomicsMultiple sclerosis biomarker discovery in cerebrospinal fluid using glycopeptide enrichment, TMT labeling and LC-MS/MS
Multiple sclerosis biomarker discovery in pooled cerebrospinal fluid (CSF) using glycopeptide enrichment, TMT labeling and LC-MS/MS. Comparing 3 pools of CSF from relapsing-remitting MS (RRMS) patients to 3 pools of CSF from patients with other neurological diseases (OND). To reveal protein groups a...
ORGANISM(S): Homo sapiens (Human) 
2016-10-13 | PXD004540 | Pride
Human Cerebrospinal fluid Tmt Discovery Glycopeptide enrichment Lc-ms/ms 
ProteomicsMultiple sclerosis cuprizone mouse model and vitamin D supplementation
Dietary supplementation of vitamin D is commonly recommended to patients with multiple sclerosis (MS). We investigated the effect of 1,25-dihydroxyvitamin-D3 (1,25-(OH)2D3) on the brain proteome in the cuprizone model during remyelination. Mice were demyelinated with dietary cuprizone for 7 weeks. T...
ORGANISM(S): Mus musculus (Mouse) 
2017-08-16 | PXD002347 | Pride
Mouse Multiple sclerosis Vitamin d Cuprizone tmt 
ProteomicsHigh and low risk of adverse acute myeloid leukemia (AML)
LC-MS/MS raw files of proteomics, phosphoproteomics and pTyr-proteomics from patients with high and low risk of adverse AML
ORGANISM(S): Homo sapiens (Human) 
2021-01-04 | PXD019785 | Pride
Acute myeloid leukemia risk 
Proteomics7 paired AML Diagnosis vs Relapse patient samples
MS-based proteomics and phosphoproteomics study based on 7 paired diagnosis-first relapse AML patient samples
ORGANISM(S): Homo sapiens (Human) 
2020-06-12 | PXD018359 | Pride
Acute myeloid leukemia relapase 
ProteomicsHuman AML patient samples, Method Optimization, LC-MSMS
We evaluated different in-solution and filter-aided sample preparation (FASP) proteomic workflows, and different enrichment strategies of phosphorylated peptides on acute myeloid leukemia (AML) patient samples. We also studied the effect of liquid nitrogen storage on the proteome and phosphoproteome...
ORGANISM(S): Homo sapiens (Human) 
2016-04-26 | PXD003822 | Pride
Human Lc-msms Aml cells Super-silac Label-free Sample preparation Phosphopeptide enrichment Ltq-orbitrap elite 
ProteomicsHuman AML cell lines LC-MS/MS - Performance of Super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines
As a direct consequence of the high diversity of the aggressive blood cancer acute myeloid leukemia (AML), proteomic samples from patients are strongly heterogeneous, rendering their accurate relative quantification challenging. In the present study, we investigated the benefits of using a super-SI...
ORGANISM(S): Homo sapiens (Human) 
2014-07-15 | PXD000441 | Pride
Human Orbitrap velos pro Lc-ms Cell lines Super-silac Aml 
ProteomicsMS-based proteomic and phosphoproteomic characterization of the AML proteome
Acute myeloid leukemia (AML) is a hematological cancer that affects mainly the elderly. Although complete remission (CR) is achieved for the majority of the patients after induction and consolidation therapies, nearly two-thirds relapse within a short interval. Therefore, understanding of the biolog...
ORGANISM(S): Homo sapiens (Human) 
2020-04-14 | PXD014997 | Pride
Lc-msms Proteomics Super-silac Phosphoproteomics Acute myeloid leukemia Human aml primary cells 
ProteomicsEPAC1 knockout mouse effects in platelets and plasma
ABSTRACT FOR BOTH PLASMA AND PLATELET-LYSATE In this article we describe the involvement of exchange factor activated by cAMP 1 (Epac1) in hemostasis and platelet activation. We have used plasma and platelet-lysate from EPAC1 knockout mice and wild-type control mice in label-free proteomics with an ...
ORGANISM(S): Mus musculus (Mouse) 
2017-07-25 | PXD000282 | Pride
Epac1 knockout Platelets Lc-ms Plasma Label-free 
ProteomicsHs_GSCs
Human Six Glioma-Derived Cancer Stem Cell Lines
ORGANISM(S): Homo Sapiens (human) 
2014-12-31 | PAe005052 | PeptideAtlas
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