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ProteomicsLibrary-free BoxCarDIA solves the missing value problem in label-free quantitative proteomics
The last decade has seen significant advances in the application of quantitative mass spectrometry-based proteomics technologies to tackle important questions in plant biology. The current standard for quantitative proteomics in plants is the use of data-dependent acquisition (DDA) analysis with or ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-05-11 | PXD022448 | Pride
Arabidopsis Label-free Boxcar Dia Directdia Data acquisition 
ProteomicsA proteome level study in the early stages of clubroot infection in Brassica napus canola.
Clubroot is a destructive root disease in Brassica species caused by a protist pathogen, Plasmodiophora brassicae. There is limited omics information available in response to the pathogen, especially in the early stages of pathogenesis. The goal of this study is to identify proteins (therefore genes...
ORGANISM(S): Brassica napus (Rape) 
2024-02-01 | PXD038670 | Pride
Boxcardia Clubroot Brassica napus 
ProteomicsMulti-omic analysis reveals the biochemical changes underpinning the varied phenotypes of the Arabidopsis long-period mutant rve 4,6,8
Plants are able to sense changes in their light environments, such as the onset of day and night, as well as anticipate these changes in order to adapt and survive. Central to this ability is the plant circadian clock, a molecular circuit that precisely orchestrates plant cell processes over the cou...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-11-03 | PXD029234 | Pride
Phosphoproteome Circadian clock Boxcardia Reveille Arabidopsis 
ProteomicsTwilight length alters clock function, growth and flowering time in Arabidopsis via LHY/CCA1
In this study we developed an experimental set-up to study variation in twilight length using recently developed 7-band LED lights with fully programmable spectra and sigmoidal ramping of light intensity in controlled growth chambers. We employed this set-up to gain a comprehensive understanding of ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-08-24 | PXD039428 | Pride
Boxcardia Light signaling Arabidopsis 
ProteomicsShaping Kale Morphology and Physiology Using Different LED Light Recipes
In the evolving landscape of horticultural science, light emitting diodes (LEDs) present an innovative method for manipulating plant growth and development. Indeed, light serves as a fundamental energy source and an environmental cue for plant life, providing us an ability to control essential plant...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-09-14 | PXD055752 | Pride
Metabolomics Horticulture Light emitting diodes Anthocyanins Photosynq Kale Quantitative proteomics 
UnknownQuantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana Using Short Gradient Multi-CV FAIMSpro BoxCar DIA.
Not available
S-EPMC10663867 | biostudies-literature
ProteomicsDefining the molecular impacts of Humalite application on field-grown wheat (Triticum aestivum L.) using quantitative proteomics
Increasing global food production demands have resulted in increased fertilizer usage, causing detrimental environmental impacts. Biostimulants, such as humic substances, are currently being applied as a strategy to increase plant nutrient-use efficiency and minimize environmental impacts within cro...
ORGANISM(S): Triticum aestivum (Wheat) 
2025-07-28 | PXD058950 | Pride
Humalite Proteomics Wheat 
ProteomicsA proteome-level investigation into Plasmodiophora brassicae resistance in Brassica napus canola
Clubroot of Brassicaceae, an economically important soil borne disease, is caused by Plasmodiophora brassicae Woronin, an obligate, biotrophic protist. This disease poses a serious threat to canola and related crops in Canada and around the globe causing significant loss to seed yield. The pathogen ...
ORGANISM(S): Brassica napus (Rape) 
2022-03-22 | PXD031070 | Pride
Boxcar dia proteomics Brassica napus Clubroot Plant-pathogen interaction Calcium binding 
ProteomicsShort Gradient Multi-CV FAIMSpro BoxCar DIA Facilitates Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana - Abiotic Stress Dataset
A major limitation in quantitative time-course proteomics is the tradeoff between depth-of-analysis and speed-of-analysis. In high complexity, high dynamic samples such as plant extracts, this is tradeoff is especially apparent. To address this, we evaluate multiple composition voltage (CV) High Fie...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD039004 | Pride
Boxcardia Faimspro Arabidopsis thaliana Directdia 
ProteomicsShort Gradient Multi-CV FAIMSpro BoxCar DIA Facilitates Quantitative Time-Course Analysis of Osmotic and Salt Stress in Arabidopsis thaliana – Technical Dataset
A major limitation in quantitative time-course proteomics is the tradeoff between depth-of-analysis and speed-of-analysis. In high complexity, high dynamic samples such as plant extracts, this is tradeoff is especially apparent. To address this, we evaluate multiple composition voltage (CV) High Fie...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD038989 | Pride
Boxcardia Faimspro Arabidopsis thaliana Directdia 
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